miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 970 0.73 0.565083
Target:  5'- aGGAaGCCcCUGggGCGGCaGGUGGGCc -3'
miRNA:   3'- -UCUaUGGcGGCuuCGCCG-CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 2878 0.66 0.923586
Target:  5'- cGAUcgACCgggGCgCGgcGCGGCGGggaGGGCGa -3'
miRNA:   3'- uCUA--UGG---CG-GCuuCGCCGCCa--UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 3481 0.75 0.459482
Target:  5'- uGGGcuUGCCGCCGcacGCGGCGGgGGGCa -3'
miRNA:   3'- -UCU--AUGGCGGCuu-CGCCGCCaUCUGc -5'
24637 5' -56.1 NC_005264.1 + 3596 0.68 0.850463
Target:  5'- cAGGUGaguagGCCGuGGUGGaCGGUGGGCGc -3'
miRNA:   3'- -UCUAUgg---CGGCuUCGCC-GCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 3675 0.68 0.817724
Target:  5'- gGGcgGCCGUCucGGCGGCG--AGACGa -3'
miRNA:   3'- -UCuaUGGCGGcuUCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 3759 0.68 0.826175
Target:  5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3'
miRNA:   3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 3792 0.7 0.744878
Target:  5'- ---cGCCGCCGAucugcGUGGCGGUccGCGa -3'
miRNA:   3'- ucuaUGGCGGCUu----CGCCGCCAucUGC- -5'
24637 5' -56.1 NC_005264.1 + 4273 0.69 0.773161
Target:  5'- cGGGaACCG-CGggGCGGCGGcAGAg- -3'
miRNA:   3'- -UCUaUGGCgGCuuCGCCGCCaUCUgc -5'
24637 5' -56.1 NC_005264.1 + 4606 0.67 0.873012
Target:  5'- ---cAgCGCCGcGGCGGC-GUAGGCGc -3'
miRNA:   3'- ucuaUgGCGGCuUCGCCGcCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 4834 0.66 0.918065
Target:  5'- cAGGUGuuCCGCC-AGGCGGCacagaGUAGGCu -3'
miRNA:   3'- -UCUAU--GGCGGcUUCGCCGc----CAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 5271 0.66 0.918065
Target:  5'- cGAgucGCgGCCGGA-CGGCGGggcGGCGg -3'
miRNA:   3'- uCUa--UGgCGGCUUcGCCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 6819 0.74 0.506352
Target:  5'- aGGGUGuuGCCgGAGGCGGCGGc-GACu -3'
miRNA:   3'- -UCUAUggCGG-CUUCGCCGCCauCUGc -5'
24637 5' -56.1 NC_005264.1 + 10996 0.75 0.468676
Target:  5'- ---cGCCGCCGGAGCGGCGGc----- -3'
miRNA:   3'- ucuaUGGCGGCUUCGCCGCCaucugc -5'
24637 5' -56.1 NC_005264.1 + 13435 0.68 0.84175
Target:  5'- ---cGCCGCCGAGacgcgacGCGGCGGcgccgaagGGGCu -3'
miRNA:   3'- ucuaUGGCGGCUU-------CGCCGCCa-------UCUGc -5'
24637 5' -56.1 NC_005264.1 + 15897 0.66 0.923586
Target:  5'- cAGAUcGCCGCCGAc-CGGCag-GGACGu -3'
miRNA:   3'- -UCUA-UGGCGGCUucGCCGccaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 16567 0.71 0.675923
Target:  5'- uGGGcGgCGCCGggGCGGCGGcgcacauGACu -3'
miRNA:   3'- -UCUaUgGCGGCuuCGCCGCCau-----CUGc -5'
24637 5' -56.1 NC_005264.1 + 18041 0.69 0.800337
Target:  5'- -cGUGCCGaCgCGAAGCGGCGGcgccGCGa -3'
miRNA:   3'- ucUAUGGC-G-GCUUCGCCGCCauc-UGC- -5'
24637 5' -56.1 NC_005264.1 + 23946 0.68 0.817724
Target:  5'- ---cGCCGCCGAuggguauguGgGGCGGUuGGugGg -3'
miRNA:   3'- ucuaUGGCGGCUu--------CgCCGCCA-UCugC- -5'
24637 5' -56.1 NC_005264.1 + 25597 0.71 0.665863
Target:  5'- ---gGCCGCCGGacgagAGCGGCG--AGACGa -3'
miRNA:   3'- ucuaUGGCGGCU-----UCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 25606 0.66 0.905713
Target:  5'- ---cGCCggGCCGGcguugcggaacacGGCGGCGGUGGGg- -3'
miRNA:   3'- ucuaUGG--CGGCU-------------UCGCCGCCAUCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.