miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 27648 0.67 0.887
Target:  5'- cAGG-AUCGCCGAuuuGGCGGCGcacGUAGAa- -3'
miRNA:   3'- -UCUaUGGCGGCU---UCGCCGC---CAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 31032 0.68 0.857418
Target:  5'- cGGUGCCGCCu-AGCGGUcGUgcggcugcguugcGGACGg -3'
miRNA:   3'- uCUAUGGCGGcuUCGCCGcCA-------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 31174 0.68 0.839334
Target:  5'- -cGUGCCGCCaacggucuGGCGGCGGgcaccgcagaccgAGGCGu -3'
miRNA:   3'- ucUAUGGCGGcu------UCGCCGCCa------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 31533 0.75 0.487342
Target:  5'- gGGAggGCCGuuGggGUGGgGGcGGACGg -3'
miRNA:   3'- -UCUa-UGGCggCuuCGCCgCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 33875 0.82 0.194526
Target:  5'- uGGAgcguCCGCuCGAGGCGGCGGUGGAa- -3'
miRNA:   3'- -UCUau--GGCG-GCUUCGCCGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 34320 0.69 0.773161
Target:  5'- -uAUAgCGCCuucGAGGCGGCGGU-GAUGu -3'
miRNA:   3'- ucUAUgGCGG---CUUCGCCGCCAuCUGC- -5'
24637 5' -56.1 NC_005264.1 + 35793 0.67 0.873012
Target:  5'- cGGUGgCGCCGucGUGGCGGgcGcCu -3'
miRNA:   3'- uCUAUgGCGGCuuCGCCGCCauCuGc -5'
24637 5' -56.1 NC_005264.1 + 36248 0.66 0.928875
Target:  5'- cGGA-GCCGCaCGuGGCGGaagcgGGUAGGCc -3'
miRNA:   3'- -UCUaUGGCG-GCuUCGCCg----CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 39216 0.66 0.923586
Target:  5'- ---cGCCGCCGcGGCgcuGGCGGggaGGGCc -3'
miRNA:   3'- ucuaUGGCGGCuUCG---CCGCCa--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 39484 0.69 0.800337
Target:  5'- ---aGCCGCCaGggGCaGGCcugcgcuguGGUGGACGc -3'
miRNA:   3'- ucuaUGGCGG-CuuCG-CCG---------CCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 40023 0.68 0.842551
Target:  5'- ---gACCGCCacgcaGAucGGCGGCGGUcGACc -3'
miRNA:   3'- ucuaUGGCGG-----CU--UCGCCGCCAuCUGc -5'
24637 5' -56.1 NC_005264.1 + 40272 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 44857 0.66 0.928875
Target:  5'- cGGGUGCCGUCGAgagaucugcAGCcuggggaGGCGGgcccgucgucgucugGGGCGg -3'
miRNA:   3'- -UCUAUGGCGGCU---------UCG-------CCGCCa--------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 45640 0.7 0.725526
Target:  5'- aAGAUaACUGaCGAcGCGGCGGcUAGGCGc -3'
miRNA:   3'- -UCUA-UGGCgGCUuCGCCGCC-AUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 45777 0.67 0.900109
Target:  5'- cGAUgGgCGCCGGAGCGGCuauugcGGUcuGGGCc -3'
miRNA:   3'- uCUA-UgGCGGCUUCGCCG------CCA--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 52953 0.66 0.928875
Target:  5'- cGAUGCagCGCCucuacGCGGCGGUgcugcgaacucAGGCGg -3'
miRNA:   3'- uCUAUG--GCGGcuu--CGCCGCCA-----------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 53069 0.67 0.893666
Target:  5'- aAGGUgGCCGCgGAcccAGCGGgagugucuaagcUGGUGGACa -3'
miRNA:   3'- -UCUA-UGGCGgCU---UCGCC------------GCCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 53978 0.67 0.900109
Target:  5'- --uUGgCGCCGGAaCGGCGGcgAGACu -3'
miRNA:   3'- ucuAUgGCGGCUUcGCCGCCa-UCUGc -5'
24637 5' -56.1 NC_005264.1 + 56439 0.68 0.842551
Target:  5'- cGGUGCuUGCCGAcguaGGCGGCGuacAGACa -3'
miRNA:   3'- uCUAUG-GCGGCU----UCGCCGCca-UCUGc -5'
24637 5' -56.1 NC_005264.1 + 57497 0.66 0.923586
Target:  5'- aAGAUGCUGgCGcgcGCGGCGGcgAGAg- -3'
miRNA:   3'- -UCUAUGGCgGCuu-CGCCGCCa-UCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.