miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 159299 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 159050 0.68 0.842551
Target:  5'- ---gACCGCCacgcaGAucGGCGGCGGUcGACc -3'
miRNA:   3'- ucuaUGGCGG-----CU--UCGCCGCCAuCUGc -5'
24637 5' -56.1 NC_005264.1 + 158511 0.69 0.800337
Target:  5'- ---aGCCGCCaGggGCaGGCcugcgcuguGGUGGACGc -3'
miRNA:   3'- ucuaUGGCGG-CuuCG-CCG---------CCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 158243 0.66 0.923586
Target:  5'- ---cGCCGCCGcGGCgcuGGCGGggaGGGCc -3'
miRNA:   3'- ucuaUGGCGGCuUCG---CCGCCa--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 155275 0.66 0.928875
Target:  5'- cGGA-GCCGCaCGuGGCGGaagcgGGUAGGCc -3'
miRNA:   3'- -UCUaUGGCG-GCuUCGCCg----CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 155246 0.66 0.91231
Target:  5'- gGGAUGaggaagcaucuCCGCagCGgcGCGG-GGUAGGCGg -3'
miRNA:   3'- -UCUAU-----------GGCG--GCuuCGCCgCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 154819 0.67 0.873012
Target:  5'- cGGUGgCGCCGucGUGGCGGgcGcCu -3'
miRNA:   3'- uCUAUgGCGGCuuCGCCGCCauCuGc -5'
24637 5' -56.1 NC_005264.1 + 152677 0.76 0.406447
Target:  5'- aAGAUACuCGCCGAGGCcuggacGCGGUGGAg- -3'
miRNA:   3'- -UCUAUG-GCGGCUUCGc-----CGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 151846 0.67 0.865699
Target:  5'- uGggGCCGCCGcuccGGCGGCGacacGUGGGgGg -3'
miRNA:   3'- uCuaUGGCGGCu---UCGCCGC----CAUCUgC- -5'
24637 5' -56.1 NC_005264.1 + 150560 0.75 0.487342
Target:  5'- gGGAggGCCGuuGggGUGGgGGcGGACGg -3'
miRNA:   3'- -UCUa-UGGCggCuuCGCCgCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 150059 0.68 0.857418
Target:  5'- cGGUGCCGCCu-AGCGGUcGUgcggcugcguugcGGACGg -3'
miRNA:   3'- uCUAUGGCGGcuUCGCCGcCA-------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 145896 0.68 0.823658
Target:  5'- gGGAUGCUGgCGAgcuggaacagcuccGGCGGCGGgucAGcGCGg -3'
miRNA:   3'- -UCUAUGGCgGCU--------------UCGCCGCCa--UC-UGC- -5'
24637 5' -56.1 NC_005264.1 + 141484 0.72 0.655776
Target:  5'- ---cACCgGCCGAGGCGGCccgGGACGa -3'
miRNA:   3'- ucuaUGG-CGGCUUCGCCGccaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 141189 0.66 0.918065
Target:  5'- cAGGUugUuGCCGGucauGgGaGCGGUAGACa -3'
miRNA:   3'- -UCUAugG-CGGCUu---CgC-CGCCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 139106 0.69 0.773161
Target:  5'- cGGcUGCUGCUG-AGCGGCGGcgugugcccuuUGGGCGu -3'
miRNA:   3'- -UCuAUGGCGGCuUCGCCGCC-----------AUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 134999 0.72 0.625437
Target:  5'- cGGAUGCCGCCGcgacAGUGGCGcGaucUAGGCc -3'
miRNA:   3'- -UCUAUGGCGGCu---UCGCCGC-C---AUCUGc -5'
24637 5' -56.1 NC_005264.1 + 133767 0.66 0.906324
Target:  5'- ---cACCGCCGAcgaagAGCGGCagauGACGa -3'
miRNA:   3'- ucuaUGGCGGCU-----UCGCCGccauCUGC- -5'
24637 5' -56.1 NC_005264.1 + 132462 0.68 0.84175
Target:  5'- ---cGCCGCCGAGacgcgacGCGGCGGcgccgaagGGGCu -3'
miRNA:   3'- ucuaUGGCGGCUU-------CGCCGCCa-------UCUGc -5'
24637 5' -56.1 NC_005264.1 + 125845 0.74 0.506352
Target:  5'- aGGGUGuuGCCgGAGGCGGCGGc-GACu -3'
miRNA:   3'- -UCUAUggCGG-CUUCGCCGCCauCUGc -5'
24637 5' -56.1 NC_005264.1 + 124298 0.66 0.918065
Target:  5'- cGAgucGCgGCCGGA-CGGCGGggcGGCGg -3'
miRNA:   3'- uCUa--UGgCGGCUUcGCCGCCau-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.