miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 86317 1.09 0.00304
Target:  5'- cAGAUACCGCCGAAGCGGCGGUAGACGg -3'
miRNA:   3'- -UCUAUGGCGGCUUCGCCGCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 145896 0.68 0.823658
Target:  5'- gGGAUGCUGgCGAgcuggaacagcuccGGCGGCGGgucAGcGCGg -3'
miRNA:   3'- -UCUAUGGCgGCU--------------UCGCCGCCa--UC-UGC- -5'
24637 5' -56.1 NC_005264.1 + 31174 0.68 0.839334
Target:  5'- -cGUGCCGCCaacggucuGGCGGCGGgcaccgcagaccgAGGCGu -3'
miRNA:   3'- ucUAUGGCGGcu------UCGCCGCCa------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 155275 0.66 0.928875
Target:  5'- cGGA-GCCGCaCGuGGCGGaagcgGGUAGGCc -3'
miRNA:   3'- -UCUaUGGCG-GCuUCGCCg----CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 150560 0.75 0.487342
Target:  5'- gGGAggGCCGuuGggGUGGgGGcGGACGg -3'
miRNA:   3'- -UCUa-UGGCggCuuCGCCgCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 125845 0.74 0.506352
Target:  5'- aGGGUGuuGCCgGAGGCGGCGGc-GACu -3'
miRNA:   3'- -UCUAUggCGG-CUUCGCCGCCauCUGc -5'
24637 5' -56.1 NC_005264.1 + 25597 0.71 0.665863
Target:  5'- ---gGCCGCCGGacgagAGCGGCG--AGACGa -3'
miRNA:   3'- ucuaUGGCGGCU-----UCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 16567 0.71 0.675923
Target:  5'- uGGGcGgCGCCGggGCGGCGGcgcacauGACu -3'
miRNA:   3'- -UCUaUgGCGGCuuCGCCGCCau-----CUGc -5'
24637 5' -56.1 NC_005264.1 + 34320 0.69 0.773161
Target:  5'- -uAUAgCGCCuucGAGGCGGCGGU-GAUGu -3'
miRNA:   3'- ucUAUgGCGG---CUUCGCCGCCAuCUGC- -5'
24637 5' -56.1 NC_005264.1 + 122702 0.68 0.817724
Target:  5'- gGGcgGCCGUCucGGCGGCG--AGACGa -3'
miRNA:   3'- -UCuaUGGCGGcuUCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 158511 0.69 0.800337
Target:  5'- ---aGCCGCCaGggGCaGGCcugcgcuguGGUGGACGc -3'
miRNA:   3'- ucuaUGGCGG-CuuCG-CCG---------CCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 122818 0.7 0.744878
Target:  5'- ---cGCCGCCGAucugcGUGGCGGUccGCGa -3'
miRNA:   3'- ucuaUGGCGGCUu----CGCCGCCAucUGC- -5'
24637 5' -56.1 NC_005264.1 + 33875 0.82 0.194526
Target:  5'- uGGAgcguCCGCuCGAGGCGGCGGUGGAa- -3'
miRNA:   3'- -UCUau--GGCG-GCUUCGCCGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 18041 0.69 0.800337
Target:  5'- -cGUGCCGaCgCGAAGCGGCGGcgccGCGa -3'
miRNA:   3'- ucUAUGGC-G-GCUUCGCCGCCauc-UGC- -5'
24637 5' -56.1 NC_005264.1 + 122508 0.75 0.459482
Target:  5'- uGGGcuUGCCGCCGcacGCGGCGGgGGGCa -3'
miRNA:   3'- -UCU--AUGGCGGCuu-CGCCGCCaUCUGc -5'
24637 5' -56.1 NC_005264.1 + 64877 0.7 0.715727
Target:  5'- gAGAUugC-CCGcaAGGCGGCGG-AGAUGa -3'
miRNA:   3'- -UCUAugGcGGC--UUCGCCGCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 23946 0.68 0.817724
Target:  5'- ---cGCCGCCGAuggguauguGgGGCGGUuGGugGg -3'
miRNA:   3'- ucuaUGGCGGCUu--------CgCCGCCA-UCugC- -5'
24637 5' -56.1 NC_005264.1 + 122785 0.68 0.826175
Target:  5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3'
miRNA:   3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 10996 0.75 0.468676
Target:  5'- ---cGCCGCCGGAGCGGCGGc----- -3'
miRNA:   3'- ucuaUGGCGGCUUCGCCGCCaucugc -5'
24637 5' -56.1 NC_005264.1 + 119996 0.73 0.565083
Target:  5'- aGGAaGCCcCUGggGCGGCaGGUGGGCc -3'
miRNA:   3'- -UCUaUGGcGGCuuCGCCG-CCAUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.