Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24637 | 5' | -56.1 | NC_005264.1 | + | 3596 | 0.68 | 0.850463 |
Target: 5'- cAGGUGaguagGCCGuGGUGGaCGGUGGGCGc -3' miRNA: 3'- -UCUAUgg---CGGCuUCGCC-GCCAUCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 31174 | 0.68 | 0.839334 |
Target: 5'- -cGUGCCGCCaacggucuGGCGGCGGgcaccgcagaccgAGGCGu -3' miRNA: 3'- ucUAUGGCGGcu------UCGCCGCCa------------UCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 122818 | 0.7 | 0.744878 |
Target: 5'- ---cGCCGCCGAucugcGUGGCGGUccGCGa -3' miRNA: 3'- ucuaUGGCGGCUu----CGCCGCCAucUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 10996 | 0.75 | 0.468676 |
Target: 5'- ---cGCCGCCGGAGCGGCGGc----- -3' miRNA: 3'- ucuaUGGCGGCUUCGCCGCCaucugc -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 104977 | 0.66 | 0.91231 |
Target: 5'- cGGUGCCGCCGucucUGGCGcu-GACGa -3' miRNA: 3'- uCUAUGGCGGCuuc-GCCGCcauCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 154819 | 0.67 | 0.873012 |
Target: 5'- cGGUGgCGCCGucGUGGCGGgcGcCu -3' miRNA: 3'- uCUAUgGCGGCuuCGCCGCCauCuGc -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 145896 | 0.68 | 0.823658 |
Target: 5'- gGGAUGCUGgCGAgcuggaacagcuccGGCGGCGGgucAGcGCGg -3' miRNA: 3'- -UCUAUGGCgGCU--------------UCGCCGCCa--UC-UGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 122508 | 0.75 | 0.459482 |
Target: 5'- uGGGcuUGCCGCCGcacGCGGCGGgGGGCa -3' miRNA: 3'- -UCU--AUGGCGGCuu-CGCCGCCaUCUGc -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 123633 | 0.67 | 0.873012 |
Target: 5'- ---cAgCGCCGcGGCGGC-GUAGGCGc -3' miRNA: 3'- ucuaUgGCGGCuUCGCCGcCAUCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 33875 | 0.82 | 0.194526 |
Target: 5'- uGGAgcguCCGCuCGAGGCGGCGGUGGAa- -3' miRNA: 3'- -UCUau--GGCG-GCUUCGCCGCCAUCUgc -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 122785 | 0.68 | 0.826175 |
Target: 5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3' miRNA: 3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 150059 | 0.68 | 0.857418 |
Target: 5'- cGGUGCCGCCu-AGCGGUcGUgcggcugcguugcGGACGg -3' miRNA: 3'- uCUAUGGCGGcuUCGCCGcCA-------------UCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 18041 | 0.69 | 0.800337 |
Target: 5'- -cGUGCCGaCgCGAAGCGGCGGcgccGCGa -3' miRNA: 3'- ucUAUGGC-G-GCUUCGCCGCCauc-UGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 34320 | 0.69 | 0.773161 |
Target: 5'- -uAUAgCGCCuucGAGGCGGCGGU-GAUGu -3' miRNA: 3'- ucUAUgGCGG---CUUCGCCGCCAuCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 25597 | 0.71 | 0.665863 |
Target: 5'- ---gGCCGCCGGacgagAGCGGCG--AGACGa -3' miRNA: 3'- ucuaUGGCGGCU-----UCGCCGCcaUCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 150560 | 0.75 | 0.487342 |
Target: 5'- gGGAggGCCGuuGggGUGGgGGcGGACGg -3' miRNA: 3'- -UCUa-UGGCggCuuCGCCgCCaUCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 62596 | 0.66 | 0.923586 |
Target: 5'- ---gACCGCgCGAaguAGCGGCGc-GGACGu -3' miRNA: 3'- ucuaUGGCG-GCU---UCGCCGCcaUCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 123860 | 0.66 | 0.918065 |
Target: 5'- cAGGUGuuCCGCC-AGGCGGCacagaGUAGGCu -3' miRNA: 3'- -UCUAU--GGCGGcUUCGCCGc----CAUCUGc -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 95441 | 0.67 | 0.893666 |
Target: 5'- cGGUugC-CCGGAgauGCGGCGcaucGUAGACGa -3' miRNA: 3'- uCUAugGcGGCUU---CGCCGC----CAUCUGC- -5' |
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24637 | 5' | -56.1 | NC_005264.1 | + | 75802 | 0.67 | 0.873012 |
Target: 5'- cAGGUcgucGCCGuCCGuAGGCGcGCGGUGGuCu -3' miRNA: 3'- -UCUA----UGGC-GGC-UUCGC-CGCCAUCuGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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