miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 120706 0.67 0.880114
Target:  5'- -----gCGCCGAcaaAGcCGGCGGUcGGGCGg -3'
miRNA:   3'- ucuaugGCGGCU---UC-GCCGCCA-UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 155246 0.66 0.91231
Target:  5'- gGGAUGaggaagcaucuCCGCagCGgcGCGG-GGUAGGCGg -3'
miRNA:   3'- -UCUAU-----------GGCG--GCuuCGCCgCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 102872 0.66 0.911722
Target:  5'- ---cACCGCCGcguggcuGAGCGGCGc-GGACa -3'
miRNA:   3'- ucuaUGGCGGC-------UUCGCCGCcaUCUGc -5'
24637 5' -56.1 NC_005264.1 + 133767 0.66 0.906324
Target:  5'- ---cACCGCCGAcgaagAGCGGCagauGACGa -3'
miRNA:   3'- ucuaUGGCGGCU-----UCGCCGccauCUGC- -5'
24637 5' -56.1 NC_005264.1 + 25606 0.66 0.905713
Target:  5'- ---cGCCggGCCGGcguugcggaacacGGCGGCGGUGGGg- -3'
miRNA:   3'- ucuaUGG--CGGCU-------------UCGCCGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 99859 0.67 0.900109
Target:  5'- uGGAguCCGCCaAAGCcGCGGUGG-CGg -3'
miRNA:   3'- -UCUauGGCGGcUUCGcCGCCAUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 45777 0.67 0.900109
Target:  5'- cGAUgGgCGCCGGAGCGGCuauugcGGUcuGGGCc -3'
miRNA:   3'- uCUA-UgGCGGCUUCGCCG------CCA--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 53069 0.67 0.893666
Target:  5'- aAGGUgGCCGCgGAcccAGCGGgagugucuaagcUGGUGGACa -3'
miRNA:   3'- -UCUA-UGGCGgCU---UCGCC------------GCCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 40272 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 4834 0.66 0.918065
Target:  5'- cAGGUGuuCCGCC-AGGCGGCacagaGUAGGCu -3'
miRNA:   3'- -UCUAU--GGCGGcUUCGCCGc----CAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 5271 0.66 0.918065
Target:  5'- cGAgucGCgGCCGGA-CGGCGGggcGGCGg -3'
miRNA:   3'- uCUa--UGgCGGCUUcGCCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 84207 0.66 0.918065
Target:  5'- ---gGCCGCC---GCGGCGGUuaacagaagAGGCGc -3'
miRNA:   3'- ucuaUGGCGGcuuCGCCGCCA---------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 44857 0.66 0.928875
Target:  5'- cGGGUGCCGUCGAgagaucugcAGCcuggggaGGCGGgcccgucgucgucugGGGCGg -3'
miRNA:   3'- -UCUAUGGCGGCU---------UCG-------CCGCCa--------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 36248 0.66 0.928875
Target:  5'- cGGA-GCCGCaCGuGGCGGaagcgGGUAGGCc -3'
miRNA:   3'- -UCUaUGGCG-GCuUCGCCg----CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 120107 0.66 0.926787
Target:  5'- cGGGUGCCGCgcaGAAGUGGggcgcagcgagcaGGaGGACGg -3'
miRNA:   3'- -UCUAUGGCGg--CUUCGCCg------------CCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 15897 0.66 0.923586
Target:  5'- cAGAUcGCCGCCGAc-CGGCag-GGACGu -3'
miRNA:   3'- -UCUA-UGGCGGCUucGCCGccaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 39216 0.66 0.923586
Target:  5'- ---cGCCGCCGcGGCgcuGGCGGggaGGGCc -3'
miRNA:   3'- ucuaUGGCGGCuUCG---CCGCCa--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 2878 0.66 0.923586
Target:  5'- cGAUcgACCgggGCgCGgcGCGGCGGggaGGGCGa -3'
miRNA:   3'- uCUA--UGG---CG-GCuuCGCCGCCa--UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 95325 0.66 0.921954
Target:  5'- gAGAUugccGCCGCCGGGcGCcgcgaaacggacucGGCGGggcGGCGg -3'
miRNA:   3'- -UCUA----UGGCGGCUU-CG--------------CCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 141189 0.66 0.918065
Target:  5'- cAGGUugUuGCCGGucauGgGaGCGGUAGACa -3'
miRNA:   3'- -UCUAugG-CGGCUu---CgC-CGCCAUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.