miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24638 3' -66.7 NC_005264.1 + 153091 0.66 0.439597
Target:  5'- gGAGCaCGGCGGCUUgCCUGCcGCCgaguCAGAa -3'
miRNA:   3'- -CUCG-GUCGUCGGGgGGGCG-CGG----GUCU- -5'
24638 3' -66.7 NC_005264.1 + 65566 0.66 0.439597
Target:  5'- cGAGgCAGCGGCCaCUaCCGUGCCaAGGc -3'
miRNA:   3'- -CUCgGUCGUCGG-GGgGGCGCGGgUCU- -5'
24638 3' -66.7 NC_005264.1 + 159464 0.66 0.439597
Target:  5'- --uCCGGagaAGCCCUCgCCGCcCCCAGAc -3'
miRNA:   3'- cucGGUCg--UCGGGGG-GGCGcGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 154541 0.66 0.439597
Target:  5'- cGGCgCAGguGCCCCCgU-CGCCCAcGGg -3'
miRNA:   3'- cUCG-GUCguCGGGGGgGcGCGGGU-CU- -5'
24638 3' -66.7 NC_005264.1 + 146230 0.66 0.439597
Target:  5'- -cGCC-GCGGCgUCgUgGCGCCCGGAa -3'
miRNA:   3'- cuCGGuCGUCGgGGgGgCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 59718 0.66 0.439597
Target:  5'- -cGCCGGCGGCUa--CCGCG-CCGGAc -3'
miRNA:   3'- cuCGGUCGUCGGgggGGCGCgGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 109954 0.66 0.439597
Target:  5'- -uGCCAccacGCAGCCCCCUCGCucGCgCGu- -3'
miRNA:   3'- cuCGGU----CGUCGGGGGGGCG--CGgGUcu -5'
24638 3' -66.7 NC_005264.1 + 100027 0.66 0.439597
Target:  5'- aGGCCgcGGCGGCgCUgCUGCGUCCGGu -3'
miRNA:   3'- cUCGG--UCGUCGgGGgGGCGCGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 40437 0.66 0.439597
Target:  5'- --uCCGGagaAGCCCUCgCCGCcCCCAGAc -3'
miRNA:   3'- cucGGUCg--UCGGGGG-GGCGcGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 35514 0.66 0.439597
Target:  5'- cGGCgCAGguGCCCCCgU-CGCCCAcGGg -3'
miRNA:   3'- cUCG-GUCguCGGGGGgGcGCGGGU-CU- -5'
24638 3' -66.7 NC_005264.1 + 151055 0.66 0.431154
Target:  5'- -cGCCucgGGCuGCCCCggagugcgagCCagGCGCCCGGAg -3'
miRNA:   3'- cuCGG---UCGuCGGGG----------GGg-CGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 32028 0.66 0.431154
Target:  5'- -cGCCucgGGCuGCCCCggagugcgagCCagGCGCCCGGAg -3'
miRNA:   3'- cuCGG---UCGuCGGGG----------GGg-CGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 145682 0.66 0.426135
Target:  5'- cGAGCUcucggauuauccuguAGCcGCCCCCUCGaCGCCguaccgCAGAa -3'
miRNA:   3'- -CUCGG---------------UCGuCGGGGGGGC-GCGG------GUCU- -5'
24638 3' -66.7 NC_005264.1 + 24379 0.66 0.422808
Target:  5'- cGGCUucGCGGCUCCCCCGgCGgCgAGGu -3'
miRNA:   3'- cUCGGu-CGUCGGGGGGGC-GCgGgUCU- -5'
24638 3' -66.7 NC_005264.1 + 106669 0.66 0.422808
Target:  5'- aGAGCC--UAGCCCCCCUagaCCCGGAg -3'
miRNA:   3'- -CUCGGucGUCGGGGGGGcgcGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 111420 0.66 0.414558
Target:  5'- gGGGCgaCGGCGGCUCCCCgGCGUacgCCAu- -3'
miRNA:   3'- -CUCG--GUCGUCGGGGGGgCGCG---GGUcu -5'
24638 3' -66.7 NC_005264.1 + 125444 0.66 0.414558
Target:  5'- cGAGCgAuuguuGCGGUCCCUcugCCGCGCCCugcucGGAg -3'
miRNA:   3'- -CUCGgU-----CGUCGGGGG---GGCGCGGG-----UCU- -5'
24638 3' -66.7 NC_005264.1 + 24977 0.66 0.414558
Target:  5'- cGAGaCCuGCGGUuguccccguaCCCCCUGCgGCUCAGGc -3'
miRNA:   3'- -CUC-GGuCGUCG----------GGGGGGCG-CGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 21372 0.66 0.413739
Target:  5'- cGGCCGGUggaaagaGGCCCCgCCGCucGCCUcGAu -3'
miRNA:   3'- cUCGGUCG-------UCGGGGgGGCG--CGGGuCU- -5'
24638 3' -66.7 NC_005264.1 + 145156 0.66 0.406409
Target:  5'- cGAGCCGccGCGGCCUCggCUGCGCCUgAGGc -3'
miRNA:   3'- -CUCGGU--CGUCGGGGg-GGCGCGGG-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.