miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24638 3' -66.7 NC_005264.1 + 153091 0.66 0.439597
Target:  5'- gGAGCaCGGCGGCUUgCCUGCcGCCgaguCAGAa -3'
miRNA:   3'- -CUCG-GUCGUCGGGgGGGCG-CGG----GUCU- -5'
24638 3' -66.7 NC_005264.1 + 36039 0.66 0.406409
Target:  5'- --cCCAGC-GCCCCCUCGCucaguGCCCGa- -3'
miRNA:   3'- cucGGUCGuCGGGGGGGCG-----CGGGUcu -5'
24638 3' -66.7 NC_005264.1 + 43045 0.66 0.406409
Target:  5'- gGGGgUAGCAGaaaCCUCUCGCGCgCGGGg -3'
miRNA:   3'- -CUCgGUCGUCg--GGGGGGCGCGgGUCU- -5'
24638 3' -66.7 NC_005264.1 + 117551 0.66 0.405599
Target:  5'- uGAGCCAGguGCCgUCCaCGUucgacaagggacaGCCCgAGAc -3'
miRNA:   3'- -CUCGGUCguCGGgGGG-GCG-------------CGGG-UCU- -5'
24638 3' -66.7 NC_005264.1 + 154121 0.66 0.39836
Target:  5'- cGAGCCgaaacGGCGGCCa-CgCGCGCgCAGAg -3'
miRNA:   3'- -CUCGG-----UCGUCGGggGgGCGCGgGUCU- -5'
24638 3' -66.7 NC_005264.1 + 159012 0.66 0.39836
Target:  5'- -uGCCAGgAGCaggUCUCCGCGCgCAGGg -3'
miRNA:   3'- cuCGGUCgUCGg--GGGGGCGCGgGUCU- -5'
24638 3' -66.7 NC_005264.1 + 67488 0.66 0.395966
Target:  5'- cGGGCC-GCcGCCCCgCCgaguccguuucgcgGCGCCCGGc -3'
miRNA:   3'- -CUCGGuCGuCGGGGgGG--------------CGCGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 53067 0.66 0.39836
Target:  5'- -cGUCGGCAGCagaccguuuuagCCCCCUGUGCCUc-- -3'
miRNA:   3'- cuCGGUCGUCG------------GGGGGGCGCGGGucu -5'
24638 3' -66.7 NC_005264.1 + 9586 0.66 0.39836
Target:  5'- -cGCCcgcAGUAGUCCCCCCccauGCGCCgaAGGc -3'
miRNA:   3'- cuCGG---UCGUCGGGGGGG----CGCGGg-UCU- -5'
24638 3' -66.7 NC_005264.1 + 145156 0.66 0.406409
Target:  5'- cGAGCCGccGCGGCCUCggCUGCGCCUgAGGc -3'
miRNA:   3'- -CUCGGU--CGUCGGGGg-GGCGCGGG-UCU- -5'
24638 3' -66.7 NC_005264.1 + 5450 0.66 0.406409
Target:  5'- -cGCCGGaggaGGUCCuaaccgCCCCGcCGCCCAGc -3'
miRNA:   3'- cuCGGUCg---UCGGG------GGGGC-GCGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 111420 0.66 0.414558
Target:  5'- gGGGCgaCGGCGGCUCCCCgGCGUacgCCAu- -3'
miRNA:   3'- -CUCG--GUCGUCGGGGGGgCGCG---GGUcu -5'
24638 3' -66.7 NC_005264.1 + 100027 0.66 0.439597
Target:  5'- aGGCCgcGGCGGCgCUgCUGCGUCCGGu -3'
miRNA:   3'- cUCGG--UCGUCGgGGgGGCGCGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 40437 0.66 0.439597
Target:  5'- --uCCGGagaAGCCCUCgCCGCcCCCAGAc -3'
miRNA:   3'- cucGGUCg--UCGGGGG-GGCGcGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 35514 0.66 0.439597
Target:  5'- cGGCgCAGguGCCCCCgU-CGCCCAcGGg -3'
miRNA:   3'- cUCG-GUCguCGGGGGgGcGCGGGU-CU- -5'
24638 3' -66.7 NC_005264.1 + 32028 0.66 0.431154
Target:  5'- -cGCCucgGGCuGCCCCggagugcgagCCagGCGCCCGGAg -3'
miRNA:   3'- cuCGG---UCGuCGGGG----------GGg-CGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 145682 0.66 0.426135
Target:  5'- cGAGCUcucggauuauccuguAGCcGCCCCCUCGaCGCCguaccgCAGAa -3'
miRNA:   3'- -CUCGG---------------UCGuCGGGGGGGC-GCGG------GUCU- -5'
24638 3' -66.7 NC_005264.1 + 24379 0.66 0.422808
Target:  5'- cGGCUucGCGGCUCCCCCGgCGgCgAGGu -3'
miRNA:   3'- cUCGGu-CGUCGGGGGGGC-GCgGgUCU- -5'
24638 3' -66.7 NC_005264.1 + 106669 0.66 0.422808
Target:  5'- aGAGCC--UAGCCCCCCUagaCCCGGAg -3'
miRNA:   3'- -CUCGGucGUCGGGGGGGcgcGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 125444 0.66 0.414558
Target:  5'- cGAGCgAuuguuGCGGUCCCUcugCCGCGCCCugcucGGAg -3'
miRNA:   3'- -CUCGgU-----CGUCGGGGG---GGCGCGGG-----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.