Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24638 | 3' | -66.7 | NC_005264.1 | + | 86539 | 1.07 | 0.000435 |
Target: 5'- uGAGCCAGCAGCCCCCCCGCGCCCAGAu -3' miRNA: 3'- -CUCGGUCGUCGGGGGGGCGCGGGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 13256 | 0.78 | 0.063899 |
Target: 5'- cGGCaucgAGCAGCCCCCCUcCGCCCGGGg -3' miRNA: 3'- cUCGg---UCGUCGGGGGGGcGCGGGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 38530 | 0.73 | 0.159561 |
Target: 5'- cGGGUCAGCcGCCgCCCCGCcGUCCGGc -3' miRNA: 3'- -CUCGGUCGuCGGgGGGGCG-CGGGUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 157557 | 0.73 | 0.159561 |
Target: 5'- cGGGUCAGCcGCCgCCCCGCcGUCCGGc -3' miRNA: 3'- -CUCGGUCGuCGGgGGGGCG-CGGGUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 156937 | 0.72 | 0.171405 |
Target: 5'- aGAGCCgAGCaAGaCCCCCCCGCagacgagagGUCUAGAg -3' miRNA: 3'- -CUCGG-UCG-UC-GGGGGGGCG---------CGGGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 30345 | 0.72 | 0.175524 |
Target: 5'- uAGUCAGCAGCUgCCCUGCGgCCAc- -3' miRNA: 3'- cUCGGUCGUCGGgGGGGCGCgGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 26485 | 0.72 | 0.179731 |
Target: 5'- -cGCCGGCAGCgCCCa-GCGCCCGu- -3' miRNA: 3'- cuCGGUCGUCGgGGGggCGCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 131157 | 0.71 | 0.188414 |
Target: 5'- uGGCgGGCAGCCCCgCCGagaGCCCu-- -3' miRNA: 3'- cUCGgUCGUCGGGGgGGCg--CGGGucu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 12130 | 0.71 | 0.188414 |
Target: 5'- uGGCgGGCAGCCCCgCCGagaGCCCu-- -3' miRNA: 3'- cUCGgUCGUCGGGGgGGCg--CGGGucu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 17557 | 0.71 | 0.188414 |
Target: 5'- aAGCCuagaccGCGGCCUCCCCGUGCCa--- -3' miRNA: 3'- cUCGGu-----CGUCGGGGGGGCGCGGgucu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 8257 | 0.71 | 0.192893 |
Target: 5'- uGGCCAGCGGCgCCCUgGUGUCCGc- -3' miRNA: 3'- cUCGGUCGUCGgGGGGgCGCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 95204 | 0.71 | 0.197464 |
Target: 5'- cGGGCCGcGCAGgaCaCCCCUGCGCCCGc- -3' miRNA: 3'- -CUCGGU-CGUCg-G-GGGGGCGCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 13374 | 0.71 | 0.20213 |
Target: 5'- gGGGCCcGCGGCUCCCCCGagaccuccucCGCCgCAGc -3' miRNA: 3'- -CUCGGuCGUCGGGGGGGC----------GCGG-GUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 132401 | 0.71 | 0.20213 |
Target: 5'- gGGGCCcGCGGCUCCCCCGagaccuccucCGCCgCAGc -3' miRNA: 3'- -CUCGGuCGUCGGGGGGGC----------GCGG-GUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 10142 | 0.71 | 0.206891 |
Target: 5'- cGAGgaUAGUAGUCUCCaCCGCGUCCAGGg -3' miRNA: 3'- -CUCg-GUCGUCGGGGG-GGCGCGGGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 105692 | 0.71 | 0.211259 |
Target: 5'- -cGCCGGCgcaaagacagaccAGCCUacgUCCGCGCCCAGGu -3' miRNA: 3'- cuCGGUCG-------------UCGGGg--GGGCGCGGGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 76185 | 0.71 | 0.211749 |
Target: 5'- gGAGCUAgGguGUCCCCCgCgGCGCCCAa- -3' miRNA: 3'- -CUCGGU-CguCGGGGGG-G-CGCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 39992 | 0.7 | 0.226914 |
Target: 5'- --uCCuGCGGCCCCgCCCGgGCCCGa- -3' miRNA: 3'- cucGGuCGUCGGGG-GGGCgCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 159019 | 0.7 | 0.226914 |
Target: 5'- --uCCuGCGGCCCCgCCCGgGCCCGa- -3' miRNA: 3'- cucGGuCGUCGGGG-GGGCgCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 30067 | 0.7 | 0.242989 |
Target: 5'- uAGCCccucGuCGGCgCCgCCGCGCCCGGAc -3' miRNA: 3'- cUCGGu---C-GUCGgGGgGGCGCGGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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