Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24638 | 3' | -66.7 | NC_005264.1 | + | 162072 | 0.66 | 0.406409 |
Target: 5'- gGGGgUAGCAGaaaCCUCUCGCGCgCGGGg -3' miRNA: 3'- -CUCgGUCGUCg--GGGGGGCGCGgGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 5450 | 0.66 | 0.406409 |
Target: 5'- -cGCCGGaggaGGUCCuaaccgCCCCGcCGCCCAGc -3' miRNA: 3'- cuCGGUCg---UCGGG------GGGGC-GCGGGUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 124477 | 0.66 | 0.406409 |
Target: 5'- -cGCCGGaggaGGUCCuaaccgCCCCGcCGCCCAGc -3' miRNA: 3'- cuCGGUCg---UCGGG------GGGGC-GCGGGUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 145156 | 0.66 | 0.406409 |
Target: 5'- cGAGCCGccGCGGCCUCggCUGCGCCUgAGGc -3' miRNA: 3'- -CUCGGU--CGUCGGGGg-GGCGCGGG-UCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 36039 | 0.66 | 0.406409 |
Target: 5'- --cCCAGC-GCCCCCUCGCucaguGCCCGa- -3' miRNA: 3'- cucGGUCGuCGGGGGGGCG-----CGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 43045 | 0.66 | 0.406409 |
Target: 5'- gGGGgUAGCAGaaaCCUCUCGCGCgCGGGg -3' miRNA: 3'- -CUCgGUCGUCg--GGGGGGCGCGgGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 140513 | 0.66 | 0.406409 |
Target: 5'- uAGCC--CAGaCCCauugCCCCGCGCgCCAGAc -3' miRNA: 3'- cUCGGucGUC-GGG----GGGGCGCG-GGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 117551 | 0.66 | 0.405599 |
Target: 5'- uGAGCCAGguGCCgUCCaCGUucgacaagggacaGCCCgAGAc -3' miRNA: 3'- -CUCGGUCguCGGgGGG-GCG-------------CGGG-UCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 117044 | 0.66 | 0.401567 |
Target: 5'- cAGCgCGGCGGCCCagaccgcaauagccgCUCCgGCGCCCAu- -3' miRNA: 3'- cUCG-GUCGUCGGG---------------GGGG-CGCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 9586 | 0.66 | 0.39836 |
Target: 5'- -cGCCcgcAGUAGUCCCCCCccauGCGCCgaAGGc -3' miRNA: 3'- cuCGG---UCGUCGGGGGGG----CGCGGg-UCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 53067 | 0.66 | 0.39836 |
Target: 5'- -cGUCGGCAGCagaccguuuuagCCCCCUGUGCCUc-- -3' miRNA: 3'- cuCGGUCGUCG------------GGGGGGCGCGGGucu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 159012 | 0.66 | 0.39836 |
Target: 5'- -uGCCAGgAGCaggUCUCCGCGCgCAGGg -3' miRNA: 3'- cuCGGUCgUCGg--GGGGGCGCGgGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 154121 | 0.66 | 0.39836 |
Target: 5'- cGAGCCgaaacGGCGGCCa-CgCGCGCgCAGAg -3' miRNA: 3'- -CUCGG-----UCGUCGGggGgGCGCGgGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 67488 | 0.66 | 0.395966 |
Target: 5'- cGGGCC-GCcGCCCCgCCgaguccguuucgcgGCGCCCGGc -3' miRNA: 3'- -CUCGGuCGuCGGGGgGG--------------CGCGGGUCu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 40204 | 0.67 | 0.393581 |
Target: 5'- -cGCCcucGCGGCCCCCCgcggcgguaauucuuCGCGCCUc-- -3' miRNA: 3'- cuCGGu--CGUCGGGGGG---------------GCGCGGGucu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 159231 | 0.67 | 0.393581 |
Target: 5'- -cGCCcucGCGGCCCCCCgcggcgguaauucuuCGCGCCUc-- -3' miRNA: 3'- cuCGGu--CGUCGGGGGG---------------GCGCGGGucu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 154896 | 0.67 | 0.382574 |
Target: 5'- --uCCAGUAGCCCCUCCG-GCUCGu- -3' miRNA: 3'- cucGGUCGUCGGGGGGGCgCGGGUcu -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 126027 | 0.67 | 0.382574 |
Target: 5'- -cGCC-GC-GCCUCgCCUGCGCCgCAGAg -3' miRNA: 3'- cuCGGuCGuCGGGG-GGGCGCGG-GUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 95112 | 0.67 | 0.382574 |
Target: 5'- aGAGCCuuuGCcccgaAGCCgCCCCaccaaGCGUUCAGAa -3' miRNA: 3'- -CUCGGu--CG-----UCGG-GGGGg----CGCGGGUCU- -5' |
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24638 | 3' | -66.7 | NC_005264.1 | + | 3988 | 0.67 | 0.382574 |
Target: 5'- -cGCCAGCAgggcggcacauGCCUCCUCGCcCaCCAGGg -3' miRNA: 3'- cuCGGUCGU-----------CGGGGGGGCGcG-GGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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