miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24638 3' -66.7 NC_005264.1 + 204 0.68 0.310095
Target:  5'- cGAGCCucgaaaucGUAGCCCCCgaucgcuuuCCGUGCCUGGc -3'
miRNA:   3'- -CUCGGu-------CGUCGGGGG---------GGCGCGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 594 0.69 0.26234
Target:  5'- -cGCCAGCcccgccguAGCCCCCCCcccccccgccggcccGCGUCgCAGGc -3'
miRNA:   3'- cuCGGUCG--------UCGGGGGGG---------------CGCGG-GUCU- -5'
24638 3' -66.7 NC_005264.1 + 2710 0.67 0.359688
Target:  5'- gGAGuCCAGaUAGgCCgCCCGCGgCCGGGc -3'
miRNA:   3'- -CUC-GGUC-GUCgGGgGGGCGCgGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 3988 0.67 0.382574
Target:  5'- -cGCCAGCAgggcggcacauGCCUCCUCGCcCaCCAGGg -3'
miRNA:   3'- cuCGGUCGU-----------CGGGGGGGCGcG-GGUCU- -5'
24638 3' -66.7 NC_005264.1 + 4579 0.68 0.323714
Target:  5'- cGAGCCGGgaacgcaGGCCCUCCCcgccaGCGCCgCGGc -3'
miRNA:   3'- -CUCGGUCg------UCGGGGGGG-----CGCGG-GUCu -5'
24638 3' -66.7 NC_005264.1 + 5450 0.66 0.406409
Target:  5'- -cGCCGGaggaGGUCCuaaccgCCCCGcCGCCCAGc -3'
miRNA:   3'- cuCGGUCg---UCGGG------GGGGC-GCGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 8008 0.68 0.31685
Target:  5'- gGGGCCGGCAgaggcGCCCgCCacgacggcgccaCCGCGCCCu-- -3'
miRNA:   3'- -CUCGGUCGU-----CGGG-GG------------GGCGCGGGucu -5'
24638 3' -66.7 NC_005264.1 + 8257 0.71 0.192893
Target:  5'- uGGCCAGCGGCgCCCUgGUGUCCGc- -3'
miRNA:   3'- cUCGGUCGUCGgGGGGgCGCGGGUcu -5'
24638 3' -66.7 NC_005264.1 + 9586 0.66 0.39836
Target:  5'- -cGCCcgcAGUAGUCCCCCCccauGCGCCgaAGGc -3'
miRNA:   3'- cuCGG---UCGUCGGGGGGG----CGCGGg-UCU- -5'
24638 3' -66.7 NC_005264.1 + 9989 0.67 0.359688
Target:  5'- cGAGCCcaacgAGCccucgacgAGCCCCguagCCCGCGCCguuCGGAa -3'
miRNA:   3'- -CUCGG-----UCG--------UCGGGG----GGGCGCGG---GUCU- -5'
24638 3' -66.7 NC_005264.1 + 10142 0.71 0.206891
Target:  5'- cGAGgaUAGUAGUCUCCaCCGCGUCCAGGg -3'
miRNA:   3'- -CUCg-GUCGUCGGGGG-GGCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 12130 0.71 0.188414
Target:  5'- uGGCgGGCAGCCCCgCCGagaGCCCu-- -3'
miRNA:   3'- cUCGgUCGUCGGGGgGGCg--CGGGucu -5'
24638 3' -66.7 NC_005264.1 + 12619 0.69 0.290491
Target:  5'- aGGGCC-GCAGCCCCCCgucccacuCGCucGCCCu-- -3'
miRNA:   3'- -CUCGGuCGUCGGGGGG--------GCG--CGGGucu -5'
24638 3' -66.7 NC_005264.1 + 13256 0.78 0.063899
Target:  5'- cGGCaucgAGCAGCCCCCCUcCGCCCGGGg -3'
miRNA:   3'- cUCGg---UCGUCGGGGGGGcGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 13374 0.71 0.20213
Target:  5'- gGGGCCcGCGGCUCCCCCGagaccuccucCGCCgCAGc -3'
miRNA:   3'- -CUCGGuCGUCGGGGGGGC----------GCGG-GUCu -5'
24638 3' -66.7 NC_005264.1 + 15286 0.69 0.265882
Target:  5'- -cGUCGGCGGCCaCUUCGCGCCgCGGGa -3'
miRNA:   3'- cuCGGUCGUCGGgGGGGCGCGG-GUCU- -5'
24638 3' -66.7 NC_005264.1 + 17557 0.71 0.188414
Target:  5'- aAGCCuagaccGCGGCCUCCCCGUGCCa--- -3'
miRNA:   3'- cUCGGu-----CGUCGGGGGGGCGCGGgucu -5'
24638 3' -66.7 NC_005264.1 + 21372 0.66 0.413739
Target:  5'- cGGCCGGUggaaagaGGCCCCgCCGCucGCCUcGAu -3'
miRNA:   3'- cUCGGUCG-------UCGGGGgGGCG--CGGGuCU- -5'
24638 3' -66.7 NC_005264.1 + 24379 0.66 0.422808
Target:  5'- cGGCUucGCGGCUCCCCCGgCGgCgAGGu -3'
miRNA:   3'- cUCGGu-CGUCGGGGGGGC-GCgGgUCU- -5'
24638 3' -66.7 NC_005264.1 + 24977 0.66 0.414558
Target:  5'- cGAGaCCuGCGGUuguccccguaCCCCCUGCgGCUCAGGc -3'
miRNA:   3'- -CUC-GGuCGUCG----------GGGGGGCG-CGGGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.