miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24638 3' -66.7 NC_005264.1 + 86539 1.07 0.000435
Target:  5'- uGAGCCAGCAGCCCCCCCGCGCCCAGAu -3'
miRNA:   3'- -CUCGGUCGUCGGGGGGGCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 131646 0.69 0.290491
Target:  5'- aGGGCC-GCAGCCCCCCgucccacuCGCucGCCCu-- -3'
miRNA:   3'- -CUCGGuCGUCGGGGGG--------GCG--CGGGucu -5'
24638 3' -66.7 NC_005264.1 + 159534 0.68 0.30345
Target:  5'- cGGCCcGCcguucggaAGCCCcucacuCCCCGuCGCCCAGGg -3'
miRNA:   3'- cUCGGuCG--------UCGGG------GGGGC-GCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 146230 0.66 0.439597
Target:  5'- -cGCC-GCGGCgUCgUgGCGCCCGGAa -3'
miRNA:   3'- cuCGGuCGUCGgGGgGgCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 30345 0.72 0.175524
Target:  5'- uAGUCAGCAGCUgCCCUGCGgCCAc- -3'
miRNA:   3'- cUCGGUCGUCGGgGGGGCGCgGGUcu -5'
24638 3' -66.7 NC_005264.1 + 131157 0.71 0.188414
Target:  5'- uGGCgGGCAGCCCCgCCGagaGCCCu-- -3'
miRNA:   3'- cUCGgUCGUCGGGGgGGCg--CGGGucu -5'
24638 3' -66.7 NC_005264.1 + 95204 0.71 0.197464
Target:  5'- cGGGCCGcGCAGgaCaCCCCUGCGCCCGc- -3'
miRNA:   3'- -CUCGGU-CGUCg-G-GGGGGCGCGGGUcu -5'
24638 3' -66.7 NC_005264.1 + 132401 0.71 0.20213
Target:  5'- gGGGCCcGCGGCUCCCCCGagaccuccucCGCCgCAGc -3'
miRNA:   3'- -CUCGGuCGUCGGGGGGGC----------GCGG-GUCu -5'
24638 3' -66.7 NC_005264.1 + 76185 0.71 0.211749
Target:  5'- gGAGCUAgGguGUCCCCCgCgGCGCCCAa- -3'
miRNA:   3'- -CUCGGU-CguCGGGGGG-G-CGCGGGUcu -5'
24638 3' -66.7 NC_005264.1 + 113894 0.69 0.284176
Target:  5'- gGAGCgCAGCGGCCCgCacaaGUGCCCAu- -3'
miRNA:   3'- -CUCG-GUCGUCGGGgGgg--CGCGGGUcu -5'
24638 3' -66.7 NC_005264.1 + 30067 0.7 0.242989
Target:  5'- uAGCCccucGuCGGCgCCgCCGCGCCCGGAc -3'
miRNA:   3'- cUCGGu---C-GUCGgGGgGGCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 105692 0.71 0.211259
Target:  5'- -cGCCGGCgcaaagacagaccAGCCUacgUCCGCGCCCAGGu -3'
miRNA:   3'- cuCGGUCG-------------UCGGGg--GGGCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 13256 0.78 0.063899
Target:  5'- cGGCaucgAGCAGCCCCCCUcCGCCCGGGg -3'
miRNA:   3'- cUCGg---UCGUCGGGGGGGcGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 119621 0.69 0.26234
Target:  5'- -cGCCAGCcccgccguAGCCCCCCCcccccccgccggcccGCGUCgCAGGc -3'
miRNA:   3'- cuCGGUCG--------UCGGGGGGG---------------CGCGG-GUCU- -5'
24638 3' -66.7 NC_005264.1 + 157557 0.73 0.159561
Target:  5'- cGGGUCAGCcGCCgCCCCGCcGUCCGGc -3'
miRNA:   3'- -CUCGGUCGuCGGgGGGGCG-CGGGUCu -5'
24638 3' -66.7 NC_005264.1 + 10142 0.71 0.206891
Target:  5'- cGAGgaUAGUAGUCUCCaCCGCGUCCAGGg -3'
miRNA:   3'- -CUCg-GUCGUCGGGGG-GGCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 96968 0.69 0.284176
Target:  5'- gGGGUCAGCccuuCCCaCCCUGCGUUCAGAc -3'
miRNA:   3'- -CUCGGUCGuc--GGG-GGGGCGCGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 71269 0.68 0.30345
Target:  5'- uGAGCUccgcgacaAGCcucguGCCCCCcgCCGCGCCCGa- -3'
miRNA:   3'- -CUCGG--------UCGu----CGGGGG--GGCGCGGGUcu -5'
24638 3' -66.7 NC_005264.1 + 156937 0.72 0.171405
Target:  5'- aGAGCCgAGCaAGaCCCCCCCGCagacgagagGUCUAGAg -3'
miRNA:   3'- -CUCGG-UCG-UC-GGGGGGGCG---------CGGGUCU- -5'
24638 3' -66.7 NC_005264.1 + 8257 0.71 0.192893
Target:  5'- uGGCCAGCGGCgCCCUgGUGUCCGc- -3'
miRNA:   3'- cUCGGUCGUCGgGGGGgCGCGGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.