miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24638 5' -57.4 NC_005264.1 + 155977 0.66 0.856719
Target:  5'- -cUCUGGCUGCCGUcgggauaguucccGGCaACCaGCAa- -3'
miRNA:   3'- aaAGACUGACGGCA-------------CCGcUGG-CGUca -5'
24638 5' -57.4 NC_005264.1 + 44650 0.66 0.816406
Target:  5'- --gCUGauguagaaGCUGCCGuUGGUucccccguGGCCGCAGUa -3'
miRNA:   3'- aaaGAC--------UGACGGC-ACCG--------CUGGCGUCA- -5'
24638 5' -57.4 NC_005264.1 + 33381 0.66 0.815538
Target:  5'- -gUUUGGuagcgcuUUGgCGaUGGCGACCGCGGUg -3'
miRNA:   3'- aaAGACU-------GACgGC-ACCGCUGGCGUCA- -5'
24638 5' -57.4 NC_005264.1 + 17325 0.67 0.807653
Target:  5'- cUUCUccgUUGCCGUGGaCGuCUGCAGUg -3'
miRNA:   3'- aAAGAcu-GACGGCACC-GCuGGCGUCA- -5'
24638 5' -57.4 NC_005264.1 + 104095 0.68 0.732631
Target:  5'- -cUCUGAUaGCgcaGcGGCGGCCGCGGa -3'
miRNA:   3'- aaAGACUGaCGg--CaCCGCUGGCGUCa -5'
24638 5' -57.4 NC_005264.1 + 93787 0.68 0.732631
Target:  5'- ---aUGAcCUGCCc-GGCGGCCGCGGc -3'
miRNA:   3'- aaagACU-GACGGcaCCGCUGGCGUCa -5'
24638 5' -57.4 NC_005264.1 + 153489 0.68 0.732631
Target:  5'- -aUCUGcuCUGCCGgcaaaacGGCGGCCGCc-- -3'
miRNA:   3'- aaAGACu-GACGGCa------CCGCUGGCGuca -5'
24638 5' -57.4 NC_005264.1 + 118043 0.69 0.682604
Target:  5'- ----gGuuUGCCGcGGCGACCGCGGc -3'
miRNA:   3'- aaagaCugACGGCaCCGCUGGCGUCa -5'
24638 5' -57.4 NC_005264.1 + 12696 0.69 0.652013
Target:  5'- --cCUGAUUGUUuUGGCGugCGCGGg -3'
miRNA:   3'- aaaGACUGACGGcACCGCugGCGUCa -5'
24638 5' -57.4 NC_005264.1 + 18008 0.71 0.570315
Target:  5'- -cUCUGACgGCgGcgGGuCGGCCGCGGUc -3'
miRNA:   3'- aaAGACUGaCGgCa-CC-GCUGGCGUCA- -5'
24638 5' -57.4 NC_005264.1 + 106346 0.71 0.566274
Target:  5'- uUUUCUGACUGCCGcuUGGCGcgguuagauuucuCCGCGu- -3'
miRNA:   3'- -AAAGACUGACGGC--ACCGCu------------GGCGUca -5'
24638 5' -57.4 NC_005264.1 + 106932 0.71 0.560227
Target:  5'- uUUUCcucGACaGCUGcGGCGGCCGCAGg -3'
miRNA:   3'- -AAAGa--CUGaCGGCaCCGCUGGCGUCa -5'
24638 5' -57.4 NC_005264.1 + 53268 0.72 0.520431
Target:  5'- -gUCUGGCUuGCUGUcccgcGGCG-CCGCAGUu -3'
miRNA:   3'- aaAGACUGA-CGGCA-----CCGCuGGCGUCA- -5'
24638 5' -57.4 NC_005264.1 + 32545 0.73 0.426609
Target:  5'- --cCUGGCUGUggaUGUGGCuGCCGCGGUa -3'
miRNA:   3'- aaaGACUGACG---GCACCGcUGGCGUCA- -5'
24638 5' -57.4 NC_005264.1 + 86573 1.04 0.003897
Target:  5'- aUUUCUGACUGCCGUGGCGACCGCAGUc -3'
miRNA:   3'- -AAAGACUGACGGCACCGCUGGCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.