miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24639 3' -56.1 NC_005264.1 + 45790 0.66 0.920942
Target:  5'- aGCGGCUauugcggucuggGCCGcCGCGCUGaucGCGCUGu- -3'
miRNA:   3'- -CGUUGA------------CGGU-GCGCGACa--UGCGGCuc -5'
24639 3' -56.1 NC_005264.1 + 107892 0.66 0.920942
Target:  5'- gGCAGCUaGCgGCGCGgUGcguaUGCGCUGu- -3'
miRNA:   3'- -CGUUGA-CGgUGCGCgAC----AUGCGGCuc -5'
24639 3' -56.1 NC_005264.1 + 5995 0.66 0.920942
Target:  5'- aGCAGC-GCgGCGguCGCUGUGCGCa--- -3'
miRNA:   3'- -CGUUGaCGgUGC--GCGACAUGCGgcuc -5'
24639 3' -56.1 NC_005264.1 + 17118 0.66 0.920942
Target:  5'- aGCAGCaGCUAUGCuucuGCgGUacgGCGUCGAGg -3'
miRNA:   3'- -CGUUGaCGGUGCG----CGaCA---UGCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 27888 0.66 0.920386
Target:  5'- -uGGCUGCC-CGCGUUGgcUuucgugcagaucgGCCGAGc -3'
miRNA:   3'- cgUUGACGGuGCGCGACauG-------------CGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 63114 0.66 0.915271
Target:  5'- ----gUGCgCACGCGUauugaugccaUGUAuCGCCGAGa -3'
miRNA:   3'- cguugACG-GUGCGCG----------ACAU-GCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 16487 0.66 0.915271
Target:  5'- gGCGACgaGUCACaugcgucauucgGCGCgc-ACGCCGAGa -3'
miRNA:   3'- -CGUUGa-CGGUG------------CGCGacaUGCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 72489 0.66 0.915271
Target:  5'- gGCAGC-GUCgGCGgGUUGaagaucUGCGCCGAGa -3'
miRNA:   3'- -CGUUGaCGG-UGCgCGAC------AUGCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 130558 0.66 0.915271
Target:  5'- cGCGugUGCUACGCGCagGUcuCGCUc-- -3'
miRNA:   3'- -CGUugACGGUGCGCGa-CAu-GCGGcuc -5'
24639 3' -56.1 NC_005264.1 + 38474 0.66 0.909364
Target:  5'- aGCAuGCUGCCGCGCuuucucuccuacGUcuaUG-AUGCCGGGg -3'
miRNA:   3'- -CGU-UGACGGUGCG------------CG---ACaUGCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 84479 0.66 0.909364
Target:  5'- uGCGGCUGCUACGCuCUGg--GCCu-- -3'
miRNA:   3'- -CGUUGACGGUGCGcGACaugCGGcuc -5'
24639 3' -56.1 NC_005264.1 + 117423 0.66 0.909364
Target:  5'- cGgGGCUGUCGCgGCGCgcaggGCGCCGc- -3'
miRNA:   3'- -CgUUGACGGUG-CGCGaca--UGCGGCuc -5'
24639 3' -56.1 NC_005264.1 + 138773 0.66 0.909364
Target:  5'- uGCGcCUGgC-CGUGCUGUugGCUGuGu -3'
miRNA:   3'- -CGUuGACgGuGCGCGACAugCGGCuC- -5'
24639 3' -56.1 NC_005264.1 + 108512 0.66 0.909364
Target:  5'- -aAAC-GCCGCGCGCU-UACugcuggaucguGCCGAGa -3'
miRNA:   3'- cgUUGaCGGUGCGCGAcAUG-----------CGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 102894 0.66 0.903224
Target:  5'- cGCcACUGUCaacGCGaCGCUGguggaacucUugGCCGAGc -3'
miRNA:   3'- -CGuUGACGG---UGC-GCGAC---------AugCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 43648 0.66 0.903224
Target:  5'- cGCucGCUucGCCAgGCGUUGgcCGCUGAa -3'
miRNA:   3'- -CGu-UGA--CGGUgCGCGACauGCGGCUc -5'
24639 3' -56.1 NC_005264.1 + 55610 0.66 0.903224
Target:  5'- -gGAaaGCCGCG-GCUG-GCGCCGAa -3'
miRNA:   3'- cgUUgaCGGUGCgCGACaUGCGGCUc -5'
24639 3' -56.1 NC_005264.1 + 157194 0.66 0.896853
Target:  5'- uGCGACUaCCGcCGCGCUGUggggacaccuaGCGUCGc- -3'
miRNA:   3'- -CGUUGAcGGU-GCGCGACA-----------UGCGGCuc -5'
24639 3' -56.1 NC_005264.1 + 95074 0.66 0.896853
Target:  5'- uCGACcccaaGCCACGCaaCUGcgaccUGCGCCGAGa -3'
miRNA:   3'- cGUUGa----CGGUGCGc-GAC-----AUGCGGCUC- -5'
24639 3' -56.1 NC_005264.1 + 97328 0.66 0.896853
Target:  5'- -gAugUGCUACGCcaUGUGCGUgGAGa -3'
miRNA:   3'- cgUugACGGUGCGcgACAUGCGgCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.