miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24639 5' -57.3 NC_005264.1 + 131605 0.66 0.838129
Target:  5'- ---gGAGCGGCgcgcGUGgGCGCgCGCGGa- -3'
miRNA:   3'- augaCUUGUCG----UACgCGCG-GCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 79422 0.66 0.82974
Target:  5'- gGCgGAACccAGCGUGgGCGgUGCGGg- -3'
miRNA:   3'- aUGaCUUG--UCGUACgCGCgGCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 109577 0.66 0.82889
Target:  5'- cGCgGGACAGCAaGCcagacacGCGcCCGCGGg- -3'
miRNA:   3'- aUGaCUUGUCGUaCG-------CGC-GGCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 71118 0.66 0.826332
Target:  5'- -cCUGGugAGCAgauaaaggacacaGCGCGCCGCuuGGUc -3'
miRNA:   3'- auGACUugUCGUa------------CGCGCGGCG--CCAa -5'
24639 5' -57.3 NC_005264.1 + 150539 0.66 0.821167
Target:  5'- aGCUGGAUAGUacaGUGCGCaccgcccuGCCGCcagGGUa -3'
miRNA:   3'- aUGACUUGUCG---UACGCG--------CGGCG---CCAa -5'
24639 5' -57.3 NC_005264.1 + 50019 0.66 0.8203
Target:  5'- --aUGAACGGCAUGC-UGCCGUgccucgaGGUUg -3'
miRNA:   3'- augACUUGUCGUACGcGCGGCG-------CCAA- -5'
24639 5' -57.3 NC_005264.1 + 149208 0.66 0.812418
Target:  5'- aGCUGggUucguAGUA-GUGCGCCaGCGGUc -3'
miRNA:   3'- aUGACuuG----UCGUaCGCGCGG-CGCCAa -5'
24639 5' -57.3 NC_005264.1 + 37793 0.66 0.812418
Target:  5'- gGC-GAGCGGCGgagaagagGCGCGCCGCc--- -3'
miRNA:   3'- aUGaCUUGUCGUa-------CGCGCGGCGccaa -5'
24639 5' -57.3 NC_005264.1 + 140552 0.66 0.803502
Target:  5'- gGCUgGGAUGGCAgaaggGCGCGC-GCGGg- -3'
miRNA:   3'- aUGA-CUUGUCGUa----CGCGCGgCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 78577 0.66 0.803502
Target:  5'- uUGCUGugucGCAGCAacgcaGCGCGUguccaCGCGGUa -3'
miRNA:   3'- -AUGACu---UGUCGUa----CGCGCG-----GCGCCAa -5'
24639 5' -57.3 NC_005264.1 + 82421 0.67 0.794427
Target:  5'- aGCUGGcggggGCAGCA-GCuGuCGUCGCGGUa -3'
miRNA:   3'- aUGACU-----UGUCGUaCG-C-GCGGCGCCAa -5'
24639 5' -57.3 NC_005264.1 + 124160 0.67 0.794427
Target:  5'- gUGCUGGGCAaCGUggugauggGCGcCGCCGCGGc- -3'
miRNA:   3'- -AUGACUUGUcGUA--------CGC-GCGGCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 128745 0.67 0.785203
Target:  5'- cGCUGAGcCAuuGUGCcCGCCGCGGc- -3'
miRNA:   3'- aUGACUU-GUcgUACGcGCGGCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 148453 0.67 0.785203
Target:  5'- ---aGAACAGCcgGCGC-CCGCGa-- -3'
miRNA:   3'- augaCUUGUCGuaCGCGcGGCGCcaa -5'
24639 5' -57.3 NC_005264.1 + 9719 0.67 0.785203
Target:  5'- cGCUGAGcCAuuGUGCcCGCCGCGGc- -3'
miRNA:   3'- aUGACUU-GUcgUACGcGCGGCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 61127 0.67 0.784272
Target:  5'- gUGCUGAugcuguccuaccgGCAGCugacGCuCGCUGCGGUUg -3'
miRNA:   3'- -AUGACU-------------UGUCGua--CGcGCGGCGCCAA- -5'
24639 5' -57.3 NC_005264.1 + 53361 0.67 0.775837
Target:  5'- ---aGGACGGCGuggcaagcgugaUGCGCGaCGCGGUa -3'
miRNA:   3'- augaCUUGUCGU------------ACGCGCgGCGCCAa -5'
24639 5' -57.3 NC_005264.1 + 104096 0.67 0.775837
Target:  5'- -uCUGAuagcGCAGCG-GCG-GCCGCGGa- -3'
miRNA:   3'- auGACU----UGUCGUaCGCgCGGCGCCaa -5'
24639 5' -57.3 NC_005264.1 + 81389 0.67 0.775837
Target:  5'- uUACUGccgagauGCAuGCggGUGCGCGCCGCuuGGUg -3'
miRNA:   3'- -AUGACu------UGU-CG--UACGCGCGGCG--CCAa -5'
24639 5' -57.3 NC_005264.1 + 146332 0.67 0.775837
Target:  5'- -cCUGAcucuCGGCGUGCGCGCCGa---- -3'
miRNA:   3'- auGACUu---GUCGUACGCGCGGCgccaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.