miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2464 3' -61.1 NC_001436.1 + 491 0.67 0.068417
Target:  5'- -gCCgCCCCGGGGGcugGCcGCUCAuCACUg -3'
miRNA:   3'- gaGG-GGGGCCUCC---UGuCGAGUcGUGG- -5'
2464 3' -61.1 NC_001436.1 + 1227 0.72 0.028559
Target:  5'- -aCUCCCUGGcAGGGCGGCgaaggCGGCgaGCCa -3'
miRNA:   3'- gaGGGGGGCC-UCCUGUCGa----GUCG--UGG- -5'
2464 3' -61.1 NC_001436.1 + 3243 0.69 0.046507
Target:  5'- gUgCCCCUGG-GGGCAGCuacuugccUCAGCugUg -3'
miRNA:   3'- gAgGGGGGCCuCCUGUCG--------AGUCGugG- -5'
2464 3' -61.1 NC_001436.1 + 6727 0.73 0.023472
Target:  5'- uUCCCCCCuGGAGGGCcccGUcgCAGCcgGCCg -3'
miRNA:   3'- gAGGGGGG-CCUCCUGu--CGa-GUCG--UGG- -5'
2464 3' -61.1 NC_001436.1 + 7025 0.68 0.058284
Target:  5'- -gCCCCaucuCUGGGGGACuauGUUCGGC-CCg -3'
miRNA:   3'- gaGGGG----GGCCUCCUGu--CGAGUCGuGG- -5'
2464 3' -61.1 NC_001436.1 + 7460 0.66 0.088236
Target:  5'- -gCCaCCCCGGc---CAGCUCGGgGCCu -3'
miRNA:   3'- gaGG-GGGGCCuccuGUCGAGUCgUGG- -5'
2464 3' -61.1 NC_001436.1 + 7963 0.67 0.072928
Target:  5'- --gCCCCCGGGGGAUauuuggGGCUCAuGguCa -3'
miRNA:   3'- gagGGGGGCCUCCUG------UCGAGU-CguGg -5'
2464 3' -61.1 NC_001436.1 + 8032 1.11 0.00001
Target:  5'- uCUCCCCCCGGAGGACAGCUCAGCACCa -3'
miRNA:   3'- -GAGGGGGGCCUCCUGUCGAGUCGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.