miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24640 5' -49.9 NC_005264.1 + 139435 0.66 0.997722
Target:  5'- cGUACGCGuGCUCGGc-CGUCACa---- -3'
miRNA:   3'- -CAUGCGC-CGGGCUuuGUAGUGauaug -5'
24640 5' -49.9 NC_005264.1 + 16280 0.66 0.997722
Target:  5'- -gGCGCGGCCaGAAACcgAUCAUa---- -3'
miRNA:   3'- caUGCGCCGGgCUUUG--UAGUGauaug -5'
24640 5' -49.9 NC_005264.1 + 14947 0.66 0.997722
Target:  5'- cUACGCGGCagCCGAccuggaGGCAUCuGCaagAUGCa -3'
miRNA:   3'- cAUGCGCCG--GGCU------UUGUAG-UGa--UAUG- -5'
24640 5' -49.9 NC_005264.1 + 114027 0.66 0.997722
Target:  5'- -gGCGUGGCCCaccuuACGgUCACcgUGUACg -3'
miRNA:   3'- caUGCGCCGGGcuu--UGU-AGUG--AUAUG- -5'
24640 5' -49.9 NC_005264.1 + 75409 0.66 0.997722
Target:  5'- cUGCGCGGCCgCGGg----CAgUGUACg -3'
miRNA:   3'- cAUGCGCCGG-GCUuuguaGUgAUAUG- -5'
24640 5' -49.9 NC_005264.1 + 85574 0.66 0.997289
Target:  5'- -aGCGCGGCaCCGu-GCAcCAC-GUGCu -3'
miRNA:   3'- caUGCGCCG-GGCuuUGUaGUGaUAUG- -5'
24640 5' -49.9 NC_005264.1 + 5148 0.66 0.997289
Target:  5'- aUGCGCGGCCgCGccGCAUCGu----- -3'
miRNA:   3'- cAUGCGCCGG-GCuuUGUAGUgauaug -5'
24640 5' -49.9 NC_005264.1 + 60163 0.66 0.997289
Target:  5'- gGUGCGCGGCCUcugucAGCAcauauuggUCGCUGUc- -3'
miRNA:   3'- -CAUGCGCCGGGcu---UUGU--------AGUGAUAug -5'
24640 5' -49.9 NC_005264.1 + 69006 0.66 0.997289
Target:  5'- --cCGCGGCCCugucgcCAUCguACUGUGCc -3'
miRNA:   3'- cauGCGCCGGGcuuu--GUAG--UGAUAUG- -5'
24640 5' -49.9 NC_005264.1 + 128778 0.66 0.997242
Target:  5'- aGUGCGCGGCUuccacaaCGGGAUAaCGCUGc-- -3'
miRNA:   3'- -CAUGCGCCGG-------GCUUUGUaGUGAUaug -5'
24640 5' -49.9 NC_005264.1 + 128898 0.66 0.996789
Target:  5'- -gGCGCGGuCCCGgcGCGcCACg--GCc -3'
miRNA:   3'- caUGCGCC-GGGCuuUGUaGUGauaUG- -5'
24640 5' -49.9 NC_005264.1 + 30122 0.66 0.996789
Target:  5'- -gGCGCGGCaCCGAGcuGCGgcgCAUUGg-- -3'
miRNA:   3'- caUGCGCCG-GGCUU--UGUa--GUGAUaug -5'
24640 5' -49.9 NC_005264.1 + 73253 0.66 0.996789
Target:  5'- -gACGUGGCgUGAGcCAUUGuCUAUGCa -3'
miRNA:   3'- caUGCGCCGgGCUUuGUAGU-GAUAUG- -5'
24640 5' -49.9 NC_005264.1 + 9872 0.66 0.996789
Target:  5'- -gGCGCGGuCCCGgcGCGcCACg--GCc -3'
miRNA:   3'- caUGCGCC-GGGCuuUGUaGUGauaUG- -5'
24640 5' -49.9 NC_005264.1 + 4027 0.66 0.996216
Target:  5'- cUugGCGGgCCGAuGCAUCAggAgACg -3'
miRNA:   3'- cAugCGCCgGGCUuUGUAGUgaUaUG- -5'
24640 5' -49.9 NC_005264.1 + 34136 0.66 0.996216
Target:  5'- -gGCGCGaGCCCGccucccccaAGGCcUCGCUAgACg -3'
miRNA:   3'- caUGCGC-CGGGC---------UUUGuAGUGAUaUG- -5'
24640 5' -49.9 NC_005264.1 + 42913 0.66 0.996216
Target:  5'- --cCGCGGCCCGcGACAcgggGCcGUACa -3'
miRNA:   3'- cauGCGCCGGGCuUUGUag--UGaUAUG- -5'
24640 5' -49.9 NC_005264.1 + 123054 0.66 0.996216
Target:  5'- cUugGCGGgCCGAuGCAUCAggAgACg -3'
miRNA:   3'- cAugCGCCgGGCUuUGUAGUgaUaUG- -5'
24640 5' -49.9 NC_005264.1 + 77779 0.66 0.996216
Target:  5'- -gACGCGGCCgcaGAGACG-CACcgcgGCg -3'
miRNA:   3'- caUGCGCCGGg--CUUUGUaGUGaua-UG- -5'
24640 5' -49.9 NC_005264.1 + 153163 0.66 0.996216
Target:  5'- -gGCGCGaGCCCGccucccccaAGGCcUCGCUAgACg -3'
miRNA:   3'- caUGCGC-CGGGC---------UUUGuAGUGAUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.