miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24641 3' -54.1 NC_005264.1 + 122431 0.66 0.962124
Target:  5'- -gGCGAgUGCGUUAcgcGUgcGGCGUACAa -3'
miRNA:   3'- cgCGCUgACGCAGUu--CA--UCGCGUGUg -5'
24641 3' -54.1 NC_005264.1 + 117297 0.66 0.961773
Target:  5'- uGCGCGAUgccgcucuccgcgUGCGacuGAGaAGCGUGCGCg -3'
miRNA:   3'- -CGCGCUG-------------ACGCag-UUCaUCGCGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 48093 0.66 0.95852
Target:  5'- uCGCGGCcGCG-CGGGUucuGCacGCGCGCg -3'
miRNA:   3'- cGCGCUGaCGCaGUUCAu--CG--CGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 35789 0.66 0.95852
Target:  5'- gGCGCGGugGCGcCGucGUGGCGgGCGCc -3'
miRNA:   3'- -CGCGCUgaCGCaGUu-CAUCGCgUGUG- -5'
24641 3' -54.1 NC_005264.1 + 84289 0.66 0.95852
Target:  5'- -aGCGAC-GCG-CAA--AGCGCGCAUa -3'
miRNA:   3'- cgCGCUGaCGCaGUUcaUCGCGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 25367 0.66 0.95852
Target:  5'- -aGCGugUG-GUCGAGgagGGCGgcuaGCACg -3'
miRNA:   3'- cgCGCugACgCAGUUCa--UCGCg---UGUG- -5'
24641 3' -54.1 NC_005264.1 + 154815 0.66 0.95852
Target:  5'- gGCGCGGugGCGcCGucGUGGCGgGCGCc -3'
miRNA:   3'- -CGCGCUgaCGCaGUu-CAUCGCgUGUG- -5'
24641 3' -54.1 NC_005264.1 + 10538 0.66 0.957394
Target:  5'- cGCGCGACgaacugaagaaacuUGCG-CA---GGCGCGCAa -3'
miRNA:   3'- -CGCGCUG--------------ACGCaGUucaUCGCGUGUg -5'
24641 3' -54.1 NC_005264.1 + 69627 0.66 0.956248
Target:  5'- gGCGCGACUGCccaucGUCcAugacgacgcuuucuaGGUcGgGCACGCg -3'
miRNA:   3'- -CGCGCUGACG-----CAG-U---------------UCAuCgCGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 118180 0.66 0.954687
Target:  5'- -gGCGGCU-CGUCGAacuUGGCGCAC-Ca -3'
miRNA:   3'- cgCGCUGAcGCAGUUc--AUCGCGUGuG- -5'
24641 3' -54.1 NC_005264.1 + 150076 0.66 0.954687
Target:  5'- cGUGCGGCUGCGUUgcGgacgGCAgGCg -3'
miRNA:   3'- -CGCGCUGACGCAGuuCaucgCGUgUG- -5'
24641 3' -54.1 NC_005264.1 + 20503 0.66 0.954687
Target:  5'- cUGCGgucGCUGCGcCGAGaAGCcagggGCACGCg -3'
miRNA:   3'- cGCGC---UGACGCaGUUCaUCG-----CGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 116271 0.66 0.954687
Target:  5'- cGCGCGACU-UGgaagccGUGGCGCGgGCg -3'
miRNA:   3'- -CGCGCUGAcGCaguu--CAUCGCGUgUG- -5'
24641 3' -54.1 NC_005264.1 + 31049 0.66 0.954687
Target:  5'- cGUGCGGCUGCGUUgcGgacgGCAgGCg -3'
miRNA:   3'- -CGCGCUGACGCAGuuCaucgCGUgUG- -5'
24641 3' -54.1 NC_005264.1 + 142858 0.66 0.954687
Target:  5'- aGCGCGGucgguuugUUGCGUCGAcucGCGC-CGCg -3'
miRNA:   3'- -CGCGCU--------GACGCAGUUcauCGCGuGUG- -5'
24641 3' -54.1 NC_005264.1 + 18889 0.66 0.950622
Target:  5'- cCGCGGCuUGUGaCGAGauuuuuGCGCGCAUg -3'
miRNA:   3'- cGCGCUG-ACGCaGUUCau----CGCGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 136796 0.66 0.950622
Target:  5'- cGCGUGGCcggGCGgacaAAGcUGGCGgACGCu -3'
miRNA:   3'- -CGCGCUGa--CGCag--UUC-AUCGCgUGUG- -5'
24641 3' -54.1 NC_005264.1 + 117513 0.66 0.950622
Target:  5'- gGCGCGGC-GCGUCu----GCGguCGCu -3'
miRNA:   3'- -CGCGCUGaCGCAGuucauCGCguGUG- -5'
24641 3' -54.1 NC_005264.1 + 152782 0.66 0.950622
Target:  5'- cCGCGGCUGCaGUUAugaugGGCuCGCACa -3'
miRNA:   3'- cGCGCUGACG-CAGUuca--UCGcGUGUG- -5'
24641 3' -54.1 NC_005264.1 + 135770 0.66 0.950622
Target:  5'- uGCGC-ACgcgGCGaUCAgagaggccugGGUGGCGCuACGCg -3'
miRNA:   3'- -CGCGcUGa--CGC-AGU----------UCAUCGCG-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.