miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24641 5' -59.5 NC_005264.1 + 134776 0.66 0.846505
Target:  5'- cCCGUGUUcGCU--UCCGCgCGcuuuuACCCGGc -3'
miRNA:   3'- -GGCGCAGuCGAugAGGCG-GC-----UGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 144279 0.66 0.846505
Target:  5'- gCCgGCGgauGCcGCUCCGaCUGACgCCGGc -3'
miRNA:   3'- -GG-CGCaguCGaUGAGGC-GGCUG-GGCC- -5'
24641 5' -59.5 NC_005264.1 + 76736 0.66 0.846505
Target:  5'- gUGCG-CGGCgcauCUUCGCCGuCuuGGg -3'
miRNA:   3'- gGCGCaGUCGau--GAGGCGGCuGggCC- -5'
24641 5' -59.5 NC_005264.1 + 66612 0.66 0.846505
Target:  5'- gCCGCGUugcCGGCg---CCGUCGcgGCCCGa -3'
miRNA:   3'- -GGCGCA---GUCGaugaGGCGGC--UGGGCc -5'
24641 5' -59.5 NC_005264.1 + 34989 0.66 0.846505
Target:  5'- gCGCGcCGGguuCUAgaCCGCCGGCCgccgCGGa -3'
miRNA:   3'- gGCGCaGUC---GAUgaGGCGGCUGG----GCC- -5'
24641 5' -59.5 NC_005264.1 + 160266 0.66 0.838801
Target:  5'- cUCGCGggCGGaggACUCUGaaGACUCGGa -3'
miRNA:   3'- -GGCGCa-GUCga-UGAGGCggCUGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 125117 0.66 0.838801
Target:  5'- cUCGCGUCguAGCgg--CgGCaGACCCGGa -3'
miRNA:   3'- -GGCGCAG--UCGaugaGgCGgCUGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 6090 0.66 0.838801
Target:  5'- cUCGCGUCguAGCgg--CgGCaGACCCGGa -3'
miRNA:   3'- -GGCGCAG--UCGaugaGgCGgCUGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 41239 0.66 0.838801
Target:  5'- cUCGCGggCGGaggACUCUGaaGACUCGGa -3'
miRNA:   3'- -GGCGCa-GUCga-UGAGGCggCUGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 144618 0.66 0.838801
Target:  5'- cCCGCGUCacuAGCUAg-CCGCuCGugUCaGGu -3'
miRNA:   3'- -GGCGCAG---UCGAUgaGGCG-GCugGG-CC- -5'
24641 5' -59.5 NC_005264.1 + 127149 0.66 0.838801
Target:  5'- cCCGCcaacaaacacGUCcucuAGCUGCUCCGCaaCGACCa-- -3'
miRNA:   3'- -GGCG----------CAG----UCGAUGAGGCG--GCUGGgcc -5'
24641 5' -59.5 NC_005264.1 + 99763 0.66 0.838801
Target:  5'- uCCGCGaCGGCc-CU-CGCCGAgCUGGa -3'
miRNA:   3'- -GGCGCaGUCGauGAgGCGGCUgGGCC- -5'
24641 5' -59.5 NC_005264.1 + 100280 0.66 0.838801
Target:  5'- uCCGCG-CAGCggGCUCgGCUugcugGAaCCGGg -3'
miRNA:   3'- -GGCGCaGUCGa-UGAGgCGG-----CUgGGCC- -5'
24641 5' -59.5 NC_005264.1 + 154350 0.66 0.822888
Target:  5'- uCUGCGcCGGCccACUCUGCUG-CuuGGg -3'
miRNA:   3'- -GGCGCaGUCGa-UGAGGCGGCuGggCC- -5'
24641 5' -59.5 NC_005264.1 + 4358 0.66 0.814692
Target:  5'- gCGCGUCgcAGCaUGCuuUCCaCCGcCCCGGc -3'
miRNA:   3'- gGCGCAG--UCG-AUG--AGGcGGCuGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 5518 0.66 0.814692
Target:  5'- uCCGCGaaGGCguaACgaacgucgCCGCCG-UCCGGg -3'
miRNA:   3'- -GGCGCagUCGa--UGa-------GGCGGCuGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 52452 0.66 0.814692
Target:  5'- -aGCGUCAGCaUGCgcCCGCCG--UCGGc -3'
miRNA:   3'- ggCGCAGUCG-AUGa-GGCGGCugGGCC- -5'
24641 5' -59.5 NC_005264.1 + 124545 0.66 0.814692
Target:  5'- uCCGCGaaGGCguaACgaacgucgCCGCCG-UCCGGg -3'
miRNA:   3'- -GGCGCagUCGa--UGa-------GGCGGCuGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 123385 0.66 0.814692
Target:  5'- gCGCGUCgcAGCaUGCuuUCCaCCGcCCCGGc -3'
miRNA:   3'- gGCGCAG--UCG-AUG--AGGcGGCuGGGCC- -5'
24641 5' -59.5 NC_005264.1 + 95220 0.66 0.814692
Target:  5'- aUCGUGUCGGaCUACguaCagagGCUGACCgCGGa -3'
miRNA:   3'- -GGCGCAGUC-GAUGa--Gg---CGGCUGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.