miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24642 5' -57.9 NC_005264.1 + 16603 0.66 0.860992
Target:  5'- aGUUGUauucCGGGcGCCACGaCGCCGCGGc-- -3'
miRNA:   3'- -UAGCA----GCUU-CGGUGC-GUGGCGCCacg -5'
24642 5' -57.9 NC_005264.1 + 106410 0.66 0.860992
Target:  5'- -aCGUCG--GCaa-GCACCGCGG-GCu -3'
miRNA:   3'- uaGCAGCuuCGgugCGUGGCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 149470 0.66 0.860992
Target:  5'- cUCGggGGAGCCGCGgGCCcCGGcucgGCc -3'
miRNA:   3'- uAGCagCUUCGGUGCgUGGcGCCa---CG- -5'
24642 5' -57.9 NC_005264.1 + 4900 0.66 0.860992
Target:  5'- ---uUCGAGGCCACGCugGCCGCcGUc- -3'
miRNA:   3'- uagcAGCUUCGGUGCG--UGGCGcCAcg -5'
24642 5' -57.9 NC_005264.1 + 30443 0.66 0.860992
Target:  5'- cUCGggGGAGCCGCGgGCCcCGGcucgGCc -3'
miRNA:   3'- uAGCagCUUCGGUGCgUGGcGCCa---CG- -5'
24642 5' -57.9 NC_005264.1 + 94108 0.66 0.860992
Target:  5'- -cCGccCGAGGuUCugGCGCCGCuGGUGg -3'
miRNA:   3'- uaGCa-GCUUC-GGugCGUGGCG-CCACg -5'
24642 5' -57.9 NC_005264.1 + 46542 0.66 0.856455
Target:  5'- -cCGUCGAAgGCCAcagccguagccgccCGCGCCacggcuuccaagucGCGcGUGCg -3'
miRNA:   3'- uaGCAGCUU-CGGU--------------GCGUGG--------------CGC-CACG- -5'
24642 5' -57.9 NC_005264.1 + 68363 0.66 0.853391
Target:  5'- cGUCGUUGAgaAGUCGCucgGCGCaCGaGGUGCc -3'
miRNA:   3'- -UAGCAGCU--UCGGUG---CGUG-GCgCCACG- -5'
24642 5' -57.9 NC_005264.1 + 16903 0.66 0.853391
Target:  5'- cGUCGUCGGugaGGcCCAUGC-CCGCGcUGa -3'
miRNA:   3'- -UAGCAGCU---UC-GGUGCGuGGCGCcACg -5'
24642 5' -57.9 NC_005264.1 + 24512 0.66 0.851072
Target:  5'- cUUGUCGc-GCaCGCGCcaugaccacaacuuGCCuGCGGUGCg -3'
miRNA:   3'- uAGCAGCuuCG-GUGCG--------------UGG-CGCCACG- -5'
24642 5' -57.9 NC_005264.1 + 98224 0.66 0.845596
Target:  5'- -gCGUCG-GGCCGCGCugCGgagaGGUuauggGCg -3'
miRNA:   3'- uaGCAGCuUCGGUGCGugGCg---CCA-----CG- -5'
24642 5' -57.9 NC_005264.1 + 93510 0.66 0.845596
Target:  5'- --aGUCGAGGuUCACGCAacuacuaCGCGGaguucUGCg -3'
miRNA:   3'- uagCAGCUUC-GGUGCGUg------GCGCC-----ACG- -5'
24642 5' -57.9 NC_005264.1 + 13358 0.66 0.845596
Target:  5'- -aCGUCGggGCCGagccgggGC-CCGCGGc-- -3'
miRNA:   3'- uaGCAGCuuCGGUg------CGuGGCGCCacg -5'
24642 5' -57.9 NC_005264.1 + 30393 0.66 0.845596
Target:  5'- cUCGgcggCGGcGGUCGCGCGCC--GGUGCg -3'
miRNA:   3'- uAGCa---GCU-UCGGUGCGUGGcgCCACG- -5'
24642 5' -57.9 NC_005264.1 + 132385 0.66 0.845596
Target:  5'- -aCGUCGggGCCGagccgggGC-CCGCGGc-- -3'
miRNA:   3'- uaGCAGCuuCGGUg------CGuGGCGCCacg -5'
24642 5' -57.9 NC_005264.1 + 75804 0.66 0.845596
Target:  5'- gGUCGUCGccGUC-CGUagGCgCGCGGUGg -3'
miRNA:   3'- -UAGCAGCuuCGGuGCG--UG-GCGCCACg -5'
24642 5' -57.9 NC_005264.1 + 149420 0.66 0.845596
Target:  5'- cUCGgcggCGGcGGUCGCGCGCC--GGUGCg -3'
miRNA:   3'- uAGCa---GCU-UCGGUGCGUGGcgCCACG- -5'
24642 5' -57.9 NC_005264.1 + 118185 0.66 0.837614
Target:  5'- cUCGUCGAA-CUugGCGCaccagucuaaggCGCGGcGCa -3'
miRNA:   3'- uAGCAGCUUcGGugCGUG------------GCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 20431 0.66 0.837614
Target:  5'- cUCGUCGAAGCa--GCAauGUGG-GCg -3'
miRNA:   3'- uAGCAGCUUCGgugCGUggCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 49535 0.66 0.837614
Target:  5'- cUUGUgacaCGAgacauGGCCACGUA-CGCGGUGUu -3'
miRNA:   3'- uAGCA----GCU-----UCGGUGCGUgGCGCCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.