miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24642 5' -57.9 NC_005264.1 + 3427 0.68 0.739585
Target:  5'- -aCGUa-GGGCCGCGC-CCGCGcUGCu -3'
miRNA:   3'- uaGCAgcUUCGGUGCGuGGCGCcACG- -5'
24642 5' -57.9 NC_005264.1 + 3530 0.69 0.680768
Target:  5'- cUCGUCGAA-CCGCGaCGCgGCGGcGUc -3'
miRNA:   3'- uAGCAGCUUcGGUGC-GUGgCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 3679 0.67 0.821115
Target:  5'- cAUUGgugCGggGCCugGCGCgGaaaGG-GCg -3'
miRNA:   3'- -UAGCa--GCuuCGGugCGUGgCg--CCaCG- -5'
24642 5' -57.9 NC_005264.1 + 4149 0.73 0.438019
Target:  5'- uGUCG-CGAugcuuGCCGCccaCGCCGCGGUGUg -3'
miRNA:   3'- -UAGCaGCUu----CGGUGc--GUGGCGCCACG- -5'
24642 5' -57.9 NC_005264.1 + 4252 0.66 0.837614
Target:  5'- gAUCaGUCccggcuuGCCGCGCgggaACCGCGGgGCg -3'
miRNA:   3'- -UAG-CAGcuu----CGGUGCG----UGGCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 4900 0.66 0.860992
Target:  5'- ---uUCGAGGCCACGCugGCCGCcGUc- -3'
miRNA:   3'- uagcAGCUUCGGUGCG--UGGCGcCAcg -5'
24642 5' -57.9 NC_005264.1 + 4994 0.69 0.700619
Target:  5'- cGUCGUCGuucucGUC-CGCGCCGgGGUcGCc -3'
miRNA:   3'- -UAGCAGCuu---CGGuGCGUGGCgCCA-CG- -5'
24642 5' -57.9 NC_005264.1 + 5198 0.68 0.739585
Target:  5'- -cUGUCGu-GUCuCGCGCCGCGGcgagGCg -3'
miRNA:   3'- uaGCAGCuuCGGuGCGUGGCGCCa---CG- -5'
24642 5' -57.9 NC_005264.1 + 7450 0.7 0.649717
Target:  5'- uUCGUCGucGUUACGCuCCGCGuccggagaacgucGUGCg -3'
miRNA:   3'- uAGCAGCuuCGGUGCGuGGCGC-------------CACG- -5'
24642 5' -57.9 NC_005264.1 + 13358 0.66 0.845596
Target:  5'- -aCGUCGggGCCGagccgggGC-CCGCGGc-- -3'
miRNA:   3'- uaGCAGCuuCGGUg------CGuGGCGCCacg -5'
24642 5' -57.9 NC_005264.1 + 15285 0.74 0.403434
Target:  5'- -aCGUCGGcGGCCAcuuCGCGCCGCGGg-- -3'
miRNA:   3'- uaGCAGCU-UCGGU---GCGUGGCGCCacg -5'
24642 5' -57.9 NC_005264.1 + 16603 0.66 0.860992
Target:  5'- aGUUGUauucCGGGcGCCACGaCGCCGCGGc-- -3'
miRNA:   3'- -UAGCA----GCUU-CGGUGC-GUGGCGCCacg -5'
24642 5' -57.9 NC_005264.1 + 16903 0.66 0.853391
Target:  5'- cGUCGUCGGugaGGcCCAUGC-CCGCGcUGa -3'
miRNA:   3'- -UAGCAGCU---UC-GGUGCGuGGCGCcACg -5'
24642 5' -57.9 NC_005264.1 + 17708 0.67 0.785285
Target:  5'- -gUGUCGGGuGUUagggaaauuaccuGCGCGCCGCGGcGCa -3'
miRNA:   3'- uaGCAGCUU-CGG-------------UGCGUGGCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 18164 0.67 0.803952
Target:  5'- cGUCGUCGgcGCCACug-UCGUGGggGCg -3'
miRNA:   3'- -UAGCAGCuuCGGUGcguGGCGCCa-CG- -5'
24642 5' -57.9 NC_005264.1 + 19091 0.69 0.690717
Target:  5'- -----gGGAGCCAggacUGCACCGCGGcgGCg -3'
miRNA:   3'- uagcagCUUCGGU----GCGUGGCGCCa-CG- -5'
24642 5' -57.9 NC_005264.1 + 20249 0.66 0.829451
Target:  5'- cAUCGUCGcGGCCG-GCAUUcagggGaCGGUGCg -3'
miRNA:   3'- -UAGCAGCuUCGGUgCGUGG-----C-GCCACG- -5'
24642 5' -57.9 NC_005264.1 + 20431 0.66 0.837614
Target:  5'- cUCGUCGAAGCa--GCAauGUGG-GCg -3'
miRNA:   3'- uAGCAGCUUCGgugCGUggCGCCaCG- -5'
24642 5' -57.9 NC_005264.1 + 21241 0.68 0.748172
Target:  5'- -gCGUUGAcgacGGCUcgaguguGCGCGCCGCGGagGUg -3'
miRNA:   3'- uaGCAGCU----UCGG-------UGCGUGGCGCCa-CG- -5'
24642 5' -57.9 NC_005264.1 + 22299 0.69 0.690717
Target:  5'- gGUCGUCGGuaggauagcuguAGUCugGCG-CGCGGgGCa -3'
miRNA:   3'- -UAGCAGCU------------UCGGugCGUgGCGCCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.