miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 3' -54.3 NC_005264.1 + 134171 0.66 0.955167
Target:  5'- cGGCGCgccaugacaaguCGCACgAGaC-CAAGGGCc -3'
miRNA:   3'- aCCGCGauu---------GCGUGgUC-GaGUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 70583 0.66 0.953571
Target:  5'- gUGGCGaagAGCGCGCUuggcgaggcgGGCcUUcAGAGCa -3'
miRNA:   3'- -ACCGCga-UUGCGUGG----------UCG-AGuUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 70730 0.66 0.953571
Target:  5'- aGGUGCUAcauagaagacGCGUACaGGCgagCAAGcGGCa -3'
miRNA:   3'- aCCGCGAU----------UGCGUGgUCGa--GUUC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 15227 0.66 0.953571
Target:  5'- cGGCGauccuGCGCucuaaguucaacGCgGGCUCGAGGGg -3'
miRNA:   3'- aCCGCgau--UGCG------------UGgUCGAGUUCUCg -5'
24643 3' -54.3 NC_005264.1 + 54250 0.66 0.953571
Target:  5'- aGGCuGCUAGaGCGCC-GCa-GGGAGCg -3'
miRNA:   3'- aCCG-CGAUUgCGUGGuCGagUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 111303 0.66 0.953571
Target:  5'- aGGgGCUGcuGCggaugauaaaGCACCuGCUCGAGcAGUc -3'
miRNA:   3'- aCCgCGAU--UG----------CGUGGuCGAGUUC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 160028 0.66 0.953571
Target:  5'- cUGGaUGCUGugGCACCAaUUUGAggauGAGCg -3'
miRNA:   3'- -ACC-GCGAUugCGUGGUcGAGUU----CUCG- -5'
24643 3' -54.3 NC_005264.1 + 88998 0.66 0.953571
Target:  5'- uUGGCuauGCUGAgauCGCG-CAGCUCGcgcaugucGGGGCa -3'
miRNA:   3'- -ACCG---CGAUU---GCGUgGUCGAGU--------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 100036 0.66 0.953571
Target:  5'- cGGCGCUGcUGCGuCCGGUggaaaaauaUCAGGGuuuGCg -3'
miRNA:   3'- aCCGCGAUuGCGU-GGUCG---------AGUUCU---CG- -5'
24643 3' -54.3 NC_005264.1 + 143910 0.66 0.953571
Target:  5'- -uGCGCUGACGCA-UAGCUCuccgcuAG-GCc -3'
miRNA:   3'- acCGCGAUUGCGUgGUCGAGu-----UCuCG- -5'
24643 3' -54.3 NC_005264.1 + 45414 0.66 0.953571
Target:  5'- cGGCGCccuGCGCGCCgcgacAGCccCGAuAGCg -3'
miRNA:   3'- aCCGCGau-UGCGUGG-----UCGa-GUUcUCG- -5'
24643 3' -54.3 NC_005264.1 + 17660 0.66 0.95235
Target:  5'- cGGC-CUAGCGgcaacucagagucaCGCCGGCUCGucAGCc -3'
miRNA:   3'- aCCGcGAUUGC--------------GUGGUCGAGUucUCG- -5'
24643 3' -54.3 NC_005264.1 + 116064 0.66 0.949416
Target:  5'- gGGCGCagUAACGCGCCcaAGCg-AAGAu- -3'
miRNA:   3'- aCCGCG--AUUGCGUGG--UCGagUUCUcg -5'
24643 3' -54.3 NC_005264.1 + 118582 0.66 0.949416
Target:  5'- cGGCG-UGACGCGCCgaacAGCacuuGGGCg -3'
miRNA:   3'- aCCGCgAUUGCGUGG----UCGaguuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 98421 0.66 0.949416
Target:  5'- cUGGCGCUuACGgacuaucugaGCCAGUcguGGAGCu -3'
miRNA:   3'- -ACCGCGAuUGCg---------UGGUCGaguUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 100795 0.66 0.949416
Target:  5'- --aCGCUGGCGCAgCAgGCUCcgaaccuugcuAGAGCg -3'
miRNA:   3'- accGCGAUUGCGUgGU-CGAGu----------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 108899 0.66 0.949416
Target:  5'- gUGGUGCgcgcggucUAACGCGgaAGUUCGuguAGAGCu -3'
miRNA:   3'- -ACCGCG--------AUUGCGUggUCGAGU---UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 110396 0.66 0.949416
Target:  5'- gGGCGCaugcUGACGCu---GCUCAAaAGCg -3'
miRNA:   3'- aCCGCG----AUUGCGugguCGAGUUcUCG- -5'
24643 3' -54.3 NC_005264.1 + 126588 0.66 0.949416
Target:  5'- cGGCagau-CGCGCCAGCUCccguuuGGcAGCa -3'
miRNA:   3'- aCCGcgauuGCGUGGUCGAGu-----UC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 115638 0.66 0.949416
Target:  5'- gGGCGCc-GCGUACUGGUcgAAGGGUg -3'
miRNA:   3'- aCCGCGauUGCGUGGUCGagUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.