miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 3' -54.3 NC_005264.1 + 134171 0.66 0.955167
Target:  5'- cGGCGCgccaugacaaguCGCACgAGaC-CAAGGGCc -3'
miRNA:   3'- aCCGCGauu---------GCGUGgUC-GaGUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 11830 0.66 0.948987
Target:  5'- aUGGCGCUGuaGCGCGCaucggacacgCGGCccgucgccgccacUCGcGAGCu -3'
miRNA:   3'- -ACCGCGAU--UGCGUG----------GUCG-------------AGUuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 57429 0.66 0.94502
Target:  5'- cUGGCGCgcgaAACGgaaaacucCGCCGGCUCGuAGAa- -3'
miRNA:   3'- -ACCGCGa---UUGC--------GUGGUCGAGU-UCUcg -5'
24643 3' -54.3 NC_005264.1 + 29084 0.66 0.944567
Target:  5'- cGGCGUagaugucuGCGUAuaggcucCCAGCgccgCAAGGGCu -3'
miRNA:   3'- aCCGCGau------UGCGU-------GGUCGa---GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 54923 0.66 0.940381
Target:  5'- cGGCGCUGcugGCGaa-CGGCUgCGAGuGGCu -3'
miRNA:   3'- aCCGCGAU---UGCgugGUCGA-GUUC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 25207 0.66 0.940381
Target:  5'- -cGUGUUGGCGCACaCGGUggCcAGGGCa -3'
miRNA:   3'- acCGCGAUUGCGUG-GUCGa-GuUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 97 0.66 0.940381
Target:  5'- cGGCGCacGCGgGCC-GCUCGAGu-- -3'
miRNA:   3'- aCCGCGauUGCgUGGuCGAGUUCucg -5'
24643 3' -54.3 NC_005264.1 + 42454 0.66 0.940381
Target:  5'- aGGgGgUGACGUagacACCgGGCUCAGGucuGCg -3'
miRNA:   3'- aCCgCgAUUGCG----UGG-UCGAGUUCu--CG- -5'
24643 3' -54.3 NC_005264.1 + 91558 0.66 0.935496
Target:  5'- gGGCGCggcggGGgGCACgaGGCUUGucgcGGAGCu -3'
miRNA:   3'- aCCGCGa----UUgCGUGg-UCGAGU----UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 100795 0.66 0.949416
Target:  5'- --aCGCUGGCGCAgCAgGCUCcgaaccuugcuAGAGCg -3'
miRNA:   3'- accGCGAUUGCGUgGU-CGAGu----------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 108899 0.66 0.949416
Target:  5'- gUGGUGCgcgcggucUAACGCGgaAGUUCGuguAGAGCu -3'
miRNA:   3'- -ACCGCG--------AUUGCGUggUCGAGU---UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 110396 0.66 0.949416
Target:  5'- gGGCGCaugcUGACGCu---GCUCAAaAGCg -3'
miRNA:   3'- aCCGCG----AUUGCGugguCGAGUUcUCG- -5'
24643 3' -54.3 NC_005264.1 + 45414 0.66 0.953571
Target:  5'- cGGCGCccuGCGCGCCgcgacAGCccCGAuAGCg -3'
miRNA:   3'- aCCGCGau-UGCGUGG-----UCGa-GUUcUCG- -5'
24643 3' -54.3 NC_005264.1 + 143910 0.66 0.953571
Target:  5'- -uGCGCUGACGCA-UAGCUCuccgcuAG-GCc -3'
miRNA:   3'- acCGCGAUUGCGUgGUCGAGu-----UCuCG- -5'
24643 3' -54.3 NC_005264.1 + 100036 0.66 0.953571
Target:  5'- cGGCGCUGcUGCGuCCGGUggaaaaauaUCAGGGuuuGCg -3'
miRNA:   3'- aCCGCGAUuGCGU-GGUCG---------AGUUCU---CG- -5'
24643 3' -54.3 NC_005264.1 + 88998 0.66 0.953571
Target:  5'- uUGGCuauGCUGAgauCGCG-CAGCUCGcgcaugucGGGGCa -3'
miRNA:   3'- -ACCG---CGAUU---GCGUgGUCGAGU--------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 160028 0.66 0.953571
Target:  5'- cUGGaUGCUGugGCACCAaUUUGAggauGAGCg -3'
miRNA:   3'- -ACC-GCGAUugCGUGGUcGAGUU----CUCG- -5'
24643 3' -54.3 NC_005264.1 + 111303 0.66 0.953571
Target:  5'- aGGgGCUGcuGCggaugauaaaGCACCuGCUCGAGcAGUc -3'
miRNA:   3'- aCCgCGAU--UG----------CGUGGuCGAGUUC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 17660 0.66 0.95235
Target:  5'- cGGC-CUAGCGgcaacucagagucaCGCCGGCUCGucAGCc -3'
miRNA:   3'- aCCGcGAUUGC--------------GUGGUCGAGUucUCG- -5'
24643 3' -54.3 NC_005264.1 + 126588 0.66 0.949416
Target:  5'- cGGCagau-CGCGCCAGCUCccguuuGGcAGCa -3'
miRNA:   3'- aCCGcgauuGCGUGGUCGAGu-----UC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.