miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 3' -54.3 NC_005264.1 + 88168 1.13 0.002176
Target:  5'- gUGGCGCUAACGCACCAGCUCAAGAGCg -3'
miRNA:   3'- -ACCGCGAUUGCGUGGUCGAGUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 162692 0.81 0.259867
Target:  5'- cGGCGCgcuGCGCGCCGGCgUUAAG-GCg -3'
miRNA:   3'- aCCGCGau-UGCGUGGUCG-AGUUCuCG- -5'
24643 3' -54.3 NC_005264.1 + 43666 0.81 0.259867
Target:  5'- cGGCGCgcuGCGCGCCGGCgUUAAG-GCg -3'
miRNA:   3'- aCCGCGau-UGCGUGGUCG-AGUUCuCG- -5'
24643 3' -54.3 NC_005264.1 + 57492 0.79 0.30713
Target:  5'- cGGCgaagauGCUGGCGCGCgCGGCggCGAGAGCu -3'
miRNA:   3'- aCCG------CGAUUGCGUG-GUCGa-GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 155904 0.79 0.336966
Target:  5'- cGGCGC-GACGUAUUAGCUCAAGAcaaucGCg -3'
miRNA:   3'- aCCGCGaUUGCGUGGUCGAGUUCU-----CG- -5'
24643 3' -54.3 NC_005264.1 + 18530 0.79 0.347895
Target:  5'- gGGCGCcgucucccccugagGGCGCGCCGGCgUCAgucGGAGCg -3'
miRNA:   3'- aCCGCGa-------------UUGCGUGGUCG-AGU---UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 16775 0.78 0.365577
Target:  5'- gGGCGCgcuguucgggccgGACGCAgUuuuGCUCAAGAGCa -3'
miRNA:   3'- aCCGCGa------------UUGCGUgGu--CGAGUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 59802 0.77 0.394099
Target:  5'- gGGCGCgUAGCGCACCAuGCUUGccGGuAGCg -3'
miRNA:   3'- aCCGCG-AUUGCGUGGU-CGAGU--UC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 149428 0.77 0.420432
Target:  5'- cGGCGgUcGCGCGCCGGUgcgGAGAGCu -3'
miRNA:   3'- aCCGCgAuUGCGUGGUCGag-UUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 30401 0.77 0.420432
Target:  5'- cGGCGgUcGCGCGCCGGUgcgGAGAGCu -3'
miRNA:   3'- aCCGCgAuUGCGUGGUCGag-UUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 6838 0.76 0.438568
Target:  5'- cGGCGaCUAugGCGCCAGCgcgCAAccucugucgugcGGGCu -3'
miRNA:   3'- aCCGC-GAUugCGUGGUCGa--GUU------------CUCG- -5'
24643 3' -54.3 NC_005264.1 + 125864 0.76 0.438568
Target:  5'- cGGCGaCUAugGCGCCAGCgcgCAAccucugucgugcGGGCu -3'
miRNA:   3'- aCCGC-GAUugCGUGGUCGa--GUU------------CUCG- -5'
24643 3' -54.3 NC_005264.1 + 67283 0.76 0.466586
Target:  5'- -cGCGCUAGCGCGUCGGCUUcgAAGGGUa -3'
miRNA:   3'- acCGCGAUUGCGUGGUCGAG--UUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 160416 0.75 0.525204
Target:  5'- aGGCuGCUGuGCGC-CCAGCUUuuGGGCa -3'
miRNA:   3'- aCCG-CGAU-UGCGuGGUCGAGuuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 75092 0.74 0.545375
Target:  5'- cGGCGCUGcggcAgGCGCCGGCgccgagCuGGGGCg -3'
miRNA:   3'- aCCGCGAU----UgCGUGGUCGa-----GuUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 63256 0.74 0.545375
Target:  5'- aGGCcCUccagaaucCGCACCGGCUCGAGAGa -3'
miRNA:   3'- aCCGcGAuu------GCGUGGUCGAGUUCUCg -5'
24643 3' -54.3 NC_005264.1 + 78686 0.74 0.564764
Target:  5'- cGGCGCgcGCGCugCgaccacuucccggGGCUCGcGAGCu -3'
miRNA:   3'- aCCGCGauUGCGugG-------------UCGAGUuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 104472 0.74 0.577103
Target:  5'- cGGCGCaUAuCGCGCCGGCcccgccagaguacgaCAGGGGCg -3'
miRNA:   3'- aCCGCG-AUuGCGUGGUCGa--------------GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 136359 0.74 0.586396
Target:  5'- gGGCGCUgGGCGCuGCCGGCgCGaauagcgcuguGGAGCg -3'
miRNA:   3'- aCCGCGA-UUGCG-UGGUCGaGU-----------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 112158 0.74 0.586396
Target:  5'- aUGGCucacuGCUAACGCcucCCGGCUCGguaacuacucacAGAGCc -3'
miRNA:   3'- -ACCG-----CGAUUGCGu--GGUCGAGU------------UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.