miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 3' -54.3 NC_005264.1 + 130856 0.66 0.948987
Target:  5'- aUGGCGCUGuaGCGCGCaucggacacgCGGCccgucgccgccacUCGcGAGCu -3'
miRNA:   3'- -ACCGCGAU--UGCGUG----------GUCG-------------AGUuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 11830 0.66 0.948987
Target:  5'- aUGGCGCUGuaGCGCGCaucggacacgCGGCccgucgccgccacUCGcGAGCu -3'
miRNA:   3'- -ACCGCGAU--UGCGUG----------GUCG-------------AGUuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 58376 0.66 0.94502
Target:  5'- cGGCGCgauAUGCGCCGGauugucCAAGAc- -3'
miRNA:   3'- aCCGCGau-UGCGUGGUCga----GUUCUcg -5'
24643 3' -54.3 NC_005264.1 + 20316 0.66 0.94502
Target:  5'- aGGuCGCUGuaucguGgGCACCGGCaagCAGGAaacGCg -3'
miRNA:   3'- aCC-GCGAU------UgCGUGGUCGa--GUUCU---CG- -5'
24643 3' -54.3 NC_005264.1 + 37553 0.66 0.94502
Target:  5'- aGGCGaagcgacAGCGCGCCGccGCg-GAGGGCg -3'
miRNA:   3'- aCCGCga-----UUGCGUGGU--CGagUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 70358 0.66 0.94502
Target:  5'- gUGGCGUgcgucaaGAUGCugaugaaCGGCUCGguGGAGCu -3'
miRNA:   3'- -ACCGCGa------UUGCGug-----GUCGAGU--UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 57429 0.66 0.94502
Target:  5'- cUGGCGCgcgaAACGgaaaacucCGCCGGCUCGuAGAa- -3'
miRNA:   3'- -ACCGCGa---UUGC--------GUGGUCGAGU-UCUcg -5'
24643 3' -54.3 NC_005264.1 + 29084 0.66 0.944567
Target:  5'- cGGCGUagaugucuGCGUAuaggcucCCAGCgccgCAAGGGCu -3'
miRNA:   3'- aCCGCGau------UGCGU-------GGUCGa---GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 59721 0.66 0.944567
Target:  5'- cGGCgGCUAcCGCGCCGGacguauuggcugcCUCGaacuucucggGGGGCa -3'
miRNA:   3'- aCCG-CGAUuGCGUGGUC-------------GAGU----------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 54923 0.66 0.940381
Target:  5'- cGGCGCUGcugGCGaa-CGGCUgCGAGuGGCu -3'
miRNA:   3'- aCCGCGAU---UGCgugGUCGA-GUUC-UCG- -5'
24643 3' -54.3 NC_005264.1 + 42454 0.66 0.940381
Target:  5'- aGGgGgUGACGUagacACCgGGCUCAGGucuGCg -3'
miRNA:   3'- aCCgCgAUUGCG----UGG-UCGAGUUCu--CG- -5'
24643 3' -54.3 NC_005264.1 + 119124 0.66 0.940381
Target:  5'- cGGCGCacGCGgGCC-GCUCGAGu-- -3'
miRNA:   3'- aCCGCGauUGCgUGGuCGAGUUCucg -5'
24643 3' -54.3 NC_005264.1 + 3307 0.66 0.940381
Target:  5'- -cGCGCgggaucGCGCGCCgugcaAGCggagCGAGAGUa -3'
miRNA:   3'- acCGCGau----UGCGUGG-----UCGa---GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 97 0.66 0.940381
Target:  5'- cGGCGCacGCGgGCC-GCUCGAGu-- -3'
miRNA:   3'- aCCGCGauUGCgUGGuCGAGUUCucg -5'
24643 3' -54.3 NC_005264.1 + 25207 0.66 0.940381
Target:  5'- -cGUGUUGGCGCACaCGGUggCcAGGGCa -3'
miRNA:   3'- acCGCGAUUGCGUG-GUCGa-GuUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 55155 0.66 0.940381
Target:  5'- cUGGCGC-AGCGUAUgCGGCcUCu-GGGCg -3'
miRNA:   3'- -ACCGCGaUUGCGUG-GUCG-AGuuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 161481 0.66 0.940381
Target:  5'- aGGgGgUGACGUagacACCgGGCUCAGGucuGCg -3'
miRNA:   3'- aCCgCgAUUGCG----UGG-UCGAGUUCu--CG- -5'
24643 3' -54.3 NC_005264.1 + 69208 0.66 0.937479
Target:  5'- -cGCGCUugGAUGCGgaggaCAGCUCAgcggccagcugcgccAGAGCg -3'
miRNA:   3'- acCGCGA--UUGCGUg----GUCGAGU---------------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 132843 0.66 0.935496
Target:  5'- cGGCGCUcuacacacaucAACGuUGCCAGCggcCAGGGacGCg -3'
miRNA:   3'- aCCGCGA-----------UUGC-GUGGUCGa--GUUCU--CG- -5'
24643 3' -54.3 NC_005264.1 + 77552 0.66 0.935496
Target:  5'- aGGCGCU---GCAauGGCUCAAGAuagGCg -3'
miRNA:   3'- aCCGCGAuugCGUggUCGAGUUCU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.