miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 3' -54.3 NC_005264.1 + 97 0.66 0.940381
Target:  5'- cGGCGCacGCGgGCC-GCUCGAGu-- -3'
miRNA:   3'- aCCGCGauUGCgUGGuCGAGUUCucg -5'
24643 3' -54.3 NC_005264.1 + 257 0.67 0.911066
Target:  5'- cGGCGCUgGACGCGgCAGaagcccacuuagaUCAuucuggcgaAGAGCg -3'
miRNA:   3'- aCCGCGA-UUGCGUgGUCg------------AGU---------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 1542 0.72 0.669571
Target:  5'- cGGCGUUGAcCGCGCCGGCaauAG-GCg -3'
miRNA:   3'- aCCGCGAUU-GCGUGGUCGaguUCuCG- -5'
24643 3' -54.3 NC_005264.1 + 2888 0.69 0.857899
Target:  5'- gGGCGC-GGCGCGgCggggagGGCgacggCGAGAGCg -3'
miRNA:   3'- aCCGCGaUUGCGUgG------UCGa----GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 3307 0.66 0.940381
Target:  5'- -cGCGCgggaucGCGCGCCgugcaAGCggagCGAGAGUa -3'
miRNA:   3'- acCGCGau----UGCGUGG-----UCGa---GUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 6469 0.69 0.816137
Target:  5'- cGGCGCggcgAACGUcgggguGCgCGGCcaUCGAGGGCc -3'
miRNA:   3'- aCCGCGa---UUGCG------UG-GUCG--AGUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 6838 0.76 0.438568
Target:  5'- cGGCGaCUAugGCGCCAGCgcgCAAccucugucgugcGGGCu -3'
miRNA:   3'- aCCGC-GAUugCGUGGUCGa--GUU------------CUCG- -5'
24643 3' -54.3 NC_005264.1 + 8378 0.67 0.924434
Target:  5'- cGGCGCcgGACGCGgCgcguugaAGCUgCcGGAGCu -3'
miRNA:   3'- aCCGCGa-UUGCGUgG-------UCGA-GuUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 8440 0.73 0.6061
Target:  5'- aUGGCGCcGGCGCAacugguuUCAGCUCGAGuuCg -3'
miRNA:   3'- -ACCGCGaUUGCGU-------GGUCGAGUUCucG- -5'
24643 3' -54.3 NC_005264.1 + 9921 0.73 0.62796
Target:  5'- cGGCGCUAucuCGCGCUAgGUUCGA-AGCa -3'
miRNA:   3'- aCCGCGAUu--GCGUGGU-CGAGUUcUCG- -5'
24643 3' -54.3 NC_005264.1 + 11830 0.66 0.948987
Target:  5'- aUGGCGCUGuaGCGCGCaucggacacgCGGCccgucgccgccacUCGcGAGCu -3'
miRNA:   3'- -ACCGCGAU--UGCGUG----------GUCG-------------AGUuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 12208 0.72 0.659194
Target:  5'- gGGCGau-GCGCGCCGcCUCGccagAGAGCa -3'
miRNA:   3'- aCCGCgauUGCGUGGUcGAGU----UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 14462 0.73 0.638379
Target:  5'- uUGGCcuGUUAGCuaAUCGGCUCAAuGAGCa -3'
miRNA:   3'- -ACCG--CGAUUGcgUGGUCGAGUU-CUCG- -5'
24643 3' -54.3 NC_005264.1 + 14543 0.68 0.887554
Target:  5'- cGGCGCgcACGCGCgCGGuCUCcAGAa- -3'
miRNA:   3'- aCCGCGauUGCGUG-GUC-GAGuUCUcg -5'
24643 3' -54.3 NC_005264.1 + 14834 0.71 0.750671
Target:  5'- cGGCgGCUAugGCGacgaggacuCCagAGCUCAcGAGCg -3'
miRNA:   3'- aCCG-CGAUugCGU---------GG--UCGAGUuCUCG- -5'
24643 3' -54.3 NC_005264.1 + 15227 0.66 0.953571
Target:  5'- cGGCGauccuGCGCucuaaguucaacGCgGGCUCGAGGGg -3'
miRNA:   3'- aCCGCgau--UGCG------------UGgUCGAGUUCUCg -5'
24643 3' -54.3 NC_005264.1 + 16775 0.78 0.365577
Target:  5'- gGGCGCgcuguucgggccgGACGCAgUuuuGCUCAAGAGCa -3'
miRNA:   3'- aCCGCGa------------UUGCGUgGu--CGAGUUCUCG- -5'
24643 3' -54.3 NC_005264.1 + 16925 0.68 0.878311
Target:  5'- -cGCGCUGACccgccgccggaGCuguuCCAGCUCGccagcauccccacgAGAGCa -3'
miRNA:   3'- acCGCGAUUG-----------CGu---GGUCGAGU--------------UCUCG- -5'
24643 3' -54.3 NC_005264.1 + 17650 0.67 0.912884
Target:  5'- --aCGCUAGCGCGCCAauuguauaucguaGCcUCAGGcGCa -3'
miRNA:   3'- accGCGAUUGCGUGGU-------------CG-AGUUCuCG- -5'
24643 3' -54.3 NC_005264.1 + 17660 0.66 0.95235
Target:  5'- cGGC-CUAGCGgcaacucagagucaCGCCGGCUCGucAGCc -3'
miRNA:   3'- aCCGcGAUUGC--------------GUGGUCGAGUucUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.