Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24643 | 3' | -54.3 | NC_005264.1 | + | 88168 | 1.13 | 0.002176 |
Target: 5'- gUGGCGCUAACGCACCAGCUCAAGAGCg -3' miRNA: 3'- -ACCGCGAUUGCGUGGUCGAGUUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 14462 | 0.73 | 0.638379 |
Target: 5'- uUGGCcuGUUAGCuaAUCGGCUCAAuGAGCa -3' miRNA: 3'- -ACCG--CGAUUGcgUGGUCGAGUU-CUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 120569 | 0.72 | 0.669571 |
Target: 5'- cGGCGUUGAcCGCGCCGGCaauAG-GCg -3' miRNA: 3'- aCCGCGAUU-GCGUGGUCGaguUCuCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 70583 | 0.66 | 0.953571 |
Target: 5'- gUGGCGaagAGCGCGCUuggcgaggcgGGCcUUcAGAGCa -3' miRNA: 3'- -ACCGCga-UUGCGUGG----------UCG-AGuUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 16775 | 0.78 | 0.365577 |
Target: 5'- gGGCGCgcuguucgggccgGACGCAgUuuuGCUCAAGAGCa -3' miRNA: 3'- aCCGCGa------------UUGCGUgGu--CGAGUUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 149428 | 0.77 | 0.420432 |
Target: 5'- cGGCGgUcGCGCGCCGGUgcgGAGAGCu -3' miRNA: 3'- aCCGCgAuUGCGUGGUCGag-UUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 67283 | 0.76 | 0.466586 |
Target: 5'- -cGCGCUAGCGCGUCGGCUUcgAAGGGUa -3' miRNA: 3'- acCGCGAUUGCGUGGUCGAG--UUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 63256 | 0.74 | 0.545375 |
Target: 5'- aGGCcCUccagaaucCGCACCGGCUCGAGAGa -3' miRNA: 3'- aCCGcGAuu------GCGUGGUCGAGUUCUCg -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 136359 | 0.74 | 0.586396 |
Target: 5'- gGGCGCUgGGCGCuGCCGGCgCGaauagcgcuguGGAGCg -3' miRNA: 3'- aCCGCGA-UUGCG-UGGUCGaGU-----------UCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 128947 | 0.73 | 0.62796 |
Target: 5'- cGGCGCUAucuCGCGCUAgGUUCGA-AGCa -3' miRNA: 3'- aCCGCGAUu--GCGUGGU-CGAGUUcUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 127467 | 0.73 | 0.6061 |
Target: 5'- aUGGCGCcGGCGCAacugguuUCAGCUCGAGuuCg -3' miRNA: 3'- -ACCGCGaUUGCGU-------GGUCGAGUUCucG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 112158 | 0.74 | 0.586396 |
Target: 5'- aUGGCucacuGCUAACGCcucCCGGCUCGguaacuacucacAGAGCc -3' miRNA: 3'- -ACCG-----CGAUUGCGu--GGUCGAGU------------UCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 162692 | 0.81 | 0.259867 |
Target: 5'- cGGCGCgcuGCGCGCCGGCgUUAAG-GCg -3' miRNA: 3'- aCCGCGau-UGCGUGGUCG-AGUUCuCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 159573 | 0.73 | 0.617544 |
Target: 5'- gGGaCG-UGGCGCugCGGCUCcuGGAGCg -3' miRNA: 3'- aCC-GCgAUUGCGugGUCGAGu-UCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 57492 | 0.79 | 0.30713 |
Target: 5'- cGGCgaagauGCUGGCGCGCgCGGCggCGAGAGCu -3' miRNA: 3'- aCCG------CGAUUGCGUG-GUCGa-GUUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 75092 | 0.74 | 0.545375 |
Target: 5'- cGGCGCUGcggcAgGCGCCGGCgccgagCuGGGGCg -3' miRNA: 3'- aCCGCGAU----UgCGUGGUCGa-----GuUCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 61239 | 0.73 | 0.617544 |
Target: 5'- uUGGCGaUGGCGCGcuCCAGCUCAcGGcGCg -3' miRNA: 3'- -ACCGCgAUUGCGU--GGUCGAGUuCU-CG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 131235 | 0.72 | 0.659194 |
Target: 5'- gGGCGau-GCGCGCCGcCUCGccagAGAGCa -3' miRNA: 3'- aCCGCgauUGCGUGGUcGAGU----UCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 18530 | 0.79 | 0.347895 |
Target: 5'- gGGCGCcgucucccccugagGGCGCGCCGGCgUCAgucGGAGCg -3' miRNA: 3'- aCCGCGa-------------UUGCGUGGUCG-AGU---UCUCG- -5' |
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24643 | 3' | -54.3 | NC_005264.1 | + | 125864 | 0.76 | 0.438568 |
Target: 5'- cGGCGaCUAugGCGCCAGCgcgCAAccucugucgugcGGGCu -3' miRNA: 3'- aCCGC-GAUugCGUGGUCGa--GUU------------CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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