miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 5' -58.8 NC_005264.1 + 6819 0.65 0.8416
Target:  5'- aGGGUgUUGcCGgaGGCGGcGGCgacuaugGCGCCa -3'
miRNA:   3'- aCCCA-AGC-GCgaCUGCCaUCG-------CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 125845 0.65 0.8416
Target:  5'- aGGGUgUUGcCGgaGGCGGcGGCgacuaugGCGCCa -3'
miRNA:   3'- aCCCA-AGC-GCgaCUGCCaUCG-------CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 105394 0.66 0.837628
Target:  5'- aGGGUUCuacgaGCcGGCGGaguuuuccguuucGCGCGCCa -3'
miRNA:   3'- aCCCAAGcg---CGaCUGCCau-----------CGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 3405 0.66 0.834418
Target:  5'- gGGGUcggUGCGCgggggaggGACGuagGGCcGCGCCc -3'
miRNA:   3'- aCCCAa--GCGCGa-------CUGCca-UCG-CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 146612 0.66 0.834418
Target:  5'- cUGGGaggGgGCUcaGAgGGUAGCGCGgCg -3'
miRNA:   3'- -ACCCaagCgCGA--CUgCCAUCGCGCgG- -5'
24643 5' -58.8 NC_005264.1 + 97837 0.66 0.834418
Target:  5'- gGGGUUCauCGCgGACuacGUAGaGCGCCg -3'
miRNA:   3'- aCCCAAGc-GCGaCUGc--CAUCgCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 120107 0.66 0.834418
Target:  5'- cGGGUgcCGCGCaGAa-GUGGgGCGCa -3'
miRNA:   3'- aCCCAa-GCGCGaCUgcCAUCgCGCGg -5'
24643 5' -58.8 NC_005264.1 + 122432 0.66 0.834418
Target:  5'- gGGGUcggUGCGCgggggaggGACGuagGGCcGCGCCc -3'
miRNA:   3'- aCCCAa--GCGCGa-------CUGCca-UCG-CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 47593 0.66 0.834418
Target:  5'- cGGGgaCGCGUUGGgGG-AGacuCGCGCg -3'
miRNA:   3'- aCCCaaGCGCGACUgCCaUC---GCGCGg -5'
24643 5' -58.8 NC_005264.1 + 126278 0.66 0.829551
Target:  5'- -uGGUcCGCGgaGGCGGccaugccgcuuucgGGCGCGCg -3'
miRNA:   3'- acCCAaGCGCgaCUGCCa-------------UCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 59828 0.66 0.826272
Target:  5'- aGGG-UCGCGU--ACGccAGCGCGCa -3'
miRNA:   3'- aCCCaAGCGCGacUGCcaUCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 82193 0.66 0.81796
Target:  5'- cGGcGgccaUCGUaUUaGACGGUAGCGgCGCCa -3'
miRNA:   3'- aCC-Ca---AGCGcGA-CUGCCAUCGC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 81053 0.66 0.81796
Target:  5'- uUGGuUUCGCgggaaaGCaGACGGUAugcuGCGCGCa -3'
miRNA:   3'- -ACCcAAGCG------CGaCUGCCAU----CGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 78522 0.66 0.803465
Target:  5'- cUGGGUacgCGcCGCUGGCGucuuguuuacgcuauGCGCGCUu -3'
miRNA:   3'- -ACCCAa--GC-GCGACUGCcau------------CGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 131603 0.67 0.792093
Target:  5'- aGGGagcggCGCGC-GugGGc-GCGCGCg -3'
miRNA:   3'- aCCCaa---GCGCGaCugCCauCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 6153 0.67 0.792093
Target:  5'- cUGGGUcUCGCGCgGGCuGUacaacAGCGaCGCg -3'
miRNA:   3'- -ACCCA-AGCGCGaCUGcCA-----UCGC-GCGg -5'
24643 5' -58.8 NC_005264.1 + 21232 0.67 0.783187
Target:  5'- cGGcuuucCGCGUUGACGacggcucgaGUGuGCGCGCCg -3'
miRNA:   3'- aCCcaa--GCGCGACUGC---------CAU-CGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 30386 0.67 0.78229
Target:  5'- ----gUCGCGuCUcggcggcGGCGGUcGCGCGCCg -3'
miRNA:   3'- acccaAGCGC-GA-------CUGCCAuCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 149413 0.67 0.78229
Target:  5'- ----gUCGCGuCUcggcggcGGCGGUcGCGCGCCg -3'
miRNA:   3'- acccaAGCGC-GA-------CUGCCAuCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 66179 0.67 0.764999
Target:  5'- cGGGggUGCGCUaACGcc-GCGCGCg -3'
miRNA:   3'- aCCCaaGCGCGAcUGCcauCGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.