miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 5' -58.8 NC_005264.1 + 88205 1.12 0.001172
Target:  5'- cUGGGUUCGCGCUGACGGUAGCGCGCCa -3'
miRNA:   3'- -ACCCAAGCGCGACUGCCAUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 149864 0.79 0.205358
Target:  5'- cGGGcUCGCGUcgucgucGGCGGcGGCGCGCCg -3'
miRNA:   3'- aCCCaAGCGCGa------CUGCCaUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 87445 0.79 0.205358
Target:  5'- cGGc--CGCGCaGACGGUGGCGCGCa -3'
miRNA:   3'- aCCcaaGCGCGaCUGCCAUCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 30838 0.79 0.205358
Target:  5'- cGGGcUCGCGUcgucgucGGCGGcGGCGCGCCg -3'
miRNA:   3'- aCCCaAGCGCGa------CUGCCaUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 148492 0.74 0.395847
Target:  5'- aUGGGacgcgcuggUCGCGUUGGCGGcgAGCGcCGCg -3'
miRNA:   3'- -ACCCa--------AGCGCGACUGCCa-UCGC-GCGg -5'
24643 5' -58.8 NC_005264.1 + 142557 0.73 0.404143
Target:  5'- cGGGgccgcaagCGCGCaGACGGUccccuccgcgaGGcCGCGCCg -3'
miRNA:   3'- aCCCaa------GCGCGaCUGCCA-----------UC-GCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 58477 0.72 0.456134
Target:  5'- cUGGGaaCGC-CUGACGGUcGGCcCGCCu -3'
miRNA:   3'- -ACCCaaGCGcGACUGCCA-UCGcGCGG- -5'
24643 5' -58.8 NC_005264.1 + 9915 0.72 0.483444
Target:  5'- cGGGgacUCGCGaCUG-CGGgcuuugcGGCGCGCUg -3'
miRNA:   3'- aCCCa--AGCGC-GACuGCCa------UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 43894 0.72 0.483444
Target:  5'- aGGGggCGcCGgaGACGaUAGCGCgGCCg -3'
miRNA:   3'- aCCCaaGC-GCgaCUGCcAUCGCG-CGG- -5'
24643 5' -58.8 NC_005264.1 + 156908 0.72 0.492722
Target:  5'- cGGGUUCGgGCcGugGuUAGauaGCGCCu -3'
miRNA:   3'- aCCCAAGCgCGaCugCcAUCg--CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 117830 0.72 0.50208
Target:  5'- cGGGUUCgaggggagGCGC-GGCGG-AGUGCGCa -3'
miRNA:   3'- aCCCAAG--------CGCGaCUGCCaUCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 128877 0.71 0.510569
Target:  5'- aGGGUcaagcggccccuaUCGgGC--GCGGUcccGGCGCGCCa -3'
miRNA:   3'- aCCCA-------------AGCgCGacUGCCA---UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 9851 0.71 0.510569
Target:  5'- aGGGUcaagcggccccuaUCGgGC--GCGGUcccGGCGCGCCa -3'
miRNA:   3'- aCCCA-------------AGCgCGacUGCCA---UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 101581 0.71 0.521024
Target:  5'- cGGGUacgccgaggCGCGCcgUGAgcUGG-AGCGCGCCa -3'
miRNA:   3'- aCCCAa--------GCGCG--ACU--GCCaUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 59799 0.71 0.548967
Target:  5'- aGGGggCGCGUagcgcaccaugcuUGcCGGUAGCGcCGCa -3'
miRNA:   3'- aCCCaaGCGCG-------------ACuGCCAUCGC-GCGg -5'
24643 5' -58.8 NC_005264.1 + 86963 0.71 0.549939
Target:  5'- ---uUUCGUGCUaGACGGggggcguaAGCGCGCCu -3'
miRNA:   3'- acccAAGCGCGA-CUGCCa-------UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 142801 0.71 0.55969
Target:  5'- cUGGacgUGaCGCUGcACGGgugcgAGCGCGCCg -3'
miRNA:   3'- -ACCcaaGC-GCGAC-UGCCa----UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 92484 0.7 0.57933
Target:  5'- cGGGUacacUGCGgUGGCGGU-GCGCcugGCCa -3'
miRNA:   3'- aCCCAa---GCGCgACUGCCAuCGCG---CGG- -5'
24643 5' -58.8 NC_005264.1 + 36970 0.7 0.599112
Target:  5'- aGaGGUUgCGCGCUGGCGccaUAGuCGcCGCCg -3'
miRNA:   3'- aC-CCAA-GCGCGACUGCc--AUC-GC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 157231 0.7 0.599112
Target:  5'- aGGuGUUCGCGUgggucuucgUGGCGGcccucGGCGCGUUg -3'
miRNA:   3'- aCC-CAAGCGCG---------ACUGCCa----UCGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.