miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 5' -58.8 NC_005264.1 + 106608 0.67 0.755733
Target:  5'- uUGGGgUCGCgGCguacgugaagGACGGUuucuggGGCGCGUUc -3'
miRNA:   3'- -ACCCaAGCG-CGa---------CUGCCA------UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 124163 0.67 0.746364
Target:  5'- cUGGGcaaCGUGgUGAUGGgcGC-CGCCg -3'
miRNA:   3'- -ACCCaa-GCGCgACUGCCauCGcGCGG- -5'
24643 5' -58.8 NC_005264.1 + 34242 0.67 0.746364
Target:  5'- cGGGUuucgucccgccUCGUGCgcGCGGUAauccGCGUGCUg -3'
miRNA:   3'- aCCCA-----------AGCGCGacUGCCAU----CGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 106516 0.67 0.746364
Target:  5'- aGGcggUGCGCgacGGCGGcAGCGCgGCCg -3'
miRNA:   3'- aCCcaaGCGCGa--CUGCCaUCGCG-CGG- -5'
24643 5' -58.8 NC_005264.1 + 122645 0.68 0.7369
Target:  5'- gGGGgcCGCGagGGCGG--GCGCGCUg -3'
miRNA:   3'- aCCCaaGCGCgaCUGCCauCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 90957 0.68 0.7369
Target:  5'- cGGuGUUUGCGUcgGGCGcccGCGUGCCg -3'
miRNA:   3'- aCC-CAAGCGCGa-CUGCcauCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 3618 0.68 0.7369
Target:  5'- gGGGgcCGCGagGGCGG--GCGCGCUg -3'
miRNA:   3'- aCCCaaGCGCgaCUGCCauCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 7434 0.68 0.733089
Target:  5'- cGGGUggUCGCuaucgauguccauCUGAgGGUccGGCGCGUCa -3'
miRNA:   3'- aCCCA--AGCGc------------GACUgCCA--UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 43150 0.68 0.727349
Target:  5'- cGGGUggaGCGggGAgGGgggGGCGCGUg -3'
miRNA:   3'- aCCCAag-CGCgaCUgCCa--UCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 85475 0.68 0.727349
Target:  5'- cGGGcgaCGCGCUaGACGGgacggAGauCGCCa -3'
miRNA:   3'- aCCCaa-GCGCGA-CUGCCa----UCgcGCGG- -5'
24643 5' -58.8 NC_005264.1 + 162177 0.68 0.727349
Target:  5'- cGGGUggaGCGggGAgGGgggGGCGCGUg -3'
miRNA:   3'- aCCCAag-CGCgaCUgCCa--UCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 15375 0.68 0.717721
Target:  5'- cGGGagCGaCGC-GAUGGUGGaGUGCCu -3'
miRNA:   3'- aCCCaaGC-GCGaCUGCCAUCgCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 35771 0.68 0.717721
Target:  5'- gUGGGUgaagagGCGgaGggcGCGGUGGCGcCGUCg -3'
miRNA:   3'- -ACCCAag----CGCgaC---UGCCAUCGC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 154797 0.68 0.717721
Target:  5'- gUGGGUgaagagGCGgaGggcGCGGUGGCGcCGUCg -3'
miRNA:   3'- -ACCCAag----CGCgaC---UGCCAUCGC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 84896 0.68 0.708024
Target:  5'- cGGGc-CGCGCagGACGGgagGGCGggaagaGCCa -3'
miRNA:   3'- aCCCaaGCGCGa-CUGCCa--UCGCg-----CGG- -5'
24643 5' -58.8 NC_005264.1 + 3311 0.68 0.708024
Target:  5'- cGGGaUCGCGCgccgugcaaGCGGagcgagagUAGuCGCGCCa -3'
miRNA:   3'- aCCCaAGCGCGac-------UGCC--------AUC-GCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 121497 0.68 0.708024
Target:  5'- cUGGGccUUCGCgGCUgcuucgacGAUGGUcGGCGgGCCu -3'
miRNA:   3'- -ACCC--AAGCG-CGA--------CUGCCA-UCGCgCGG- -5'
24643 5' -58.8 NC_005264.1 + 2470 0.68 0.708024
Target:  5'- cUGGGccUUCGCgGCUgcuucgacGAUGGUcGGCGgGCCu -3'
miRNA:   3'- -ACCC--AAGCG-CGA--------CUGCCA-UCGCgCGG- -5'
24643 5' -58.8 NC_005264.1 + 87134 0.68 0.698266
Target:  5'- cGGGgcgcaccagucUUCGCGCcgaaaGACGGcgcuGCGCGCg -3'
miRNA:   3'- aCCC-----------AAGCGCGa----CUGCCau--CGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 131975 0.68 0.697287
Target:  5'- gUGGGcUCGCGaCgacagGcCGGUGGCggugggccgaccgGCGCCa -3'
miRNA:   3'- -ACCCaAGCGC-Ga----CuGCCAUCG-------------CGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.