miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 5' -58.8 NC_005264.1 + 2470 0.68 0.708024
Target:  5'- cUGGGccUUCGCgGCUgcuucgacGAUGGUcGGCGgGCCu -3'
miRNA:   3'- -ACCC--AAGCG-CGA--------CUGCCA-UCGCgCGG- -5'
24643 5' -58.8 NC_005264.1 + 2829 0.69 0.6786
Target:  5'- cGGGUUgGCGgaGGgcCGGUcGCgcucGCGCCg -3'
miRNA:   3'- aCCCAAgCGCgaCU--GCCAuCG----CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 3311 0.68 0.708024
Target:  5'- cGGGaUCGCGCgccgugcaaGCGGagcgagagUAGuCGCGCCa -3'
miRNA:   3'- aCCCaAGCGCGac-------UGCC--------AUC-GCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 3405 0.66 0.834418
Target:  5'- gGGGUcggUGCGCgggggaggGACGuagGGCcGCGCCc -3'
miRNA:   3'- aCCCAa--GCGCGa-------CUGCca-UCG-CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 3618 0.68 0.7369
Target:  5'- gGGGgcCGCGagGGCGG--GCGCGCUg -3'
miRNA:   3'- aCCCaaGCGCgaCUGCCauCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 6153 0.67 0.792093
Target:  5'- cUGGGUcUCGCGCgGGCuGUacaacAGCGaCGCg -3'
miRNA:   3'- -ACCCA-AGCGCGaCUGcCA-----UCGC-GCGg -5'
24643 5' -58.8 NC_005264.1 + 6819 0.65 0.8416
Target:  5'- aGGGUgUUGcCGgaGGCGGcGGCgacuaugGCGCCa -3'
miRNA:   3'- aCCCA-AGC-GCgaCUGCCaUCG-------CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 7434 0.68 0.733089
Target:  5'- cGGGUggUCGCuaucgauguccauCUGAgGGUccGGCGCGUCa -3'
miRNA:   3'- aCCCA--AGCGc------------GACUgCCA--UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 9690 0.69 0.638898
Target:  5'- cGGGcUCGCGCcucGACGcuGUuuCGCGCCg -3'
miRNA:   3'- aCCCaAGCGCGa--CUGC--CAucGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 9851 0.71 0.510569
Target:  5'- aGGGUcaagcggccccuaUCGgGC--GCGGUcccGGCGCGCCa -3'
miRNA:   3'- aCCCA-------------AGCgCGacUGCCA---UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 9915 0.72 0.483444
Target:  5'- cGGGgacUCGCGaCUG-CGGgcuuugcGGCGCGCUg -3'
miRNA:   3'- aCCCa--AGCGC-GACuGCCa------UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 12847 0.69 0.6786
Target:  5'- cGGGUccuucCGCGCcaGACGGUucGGgGuCGCCg -3'
miRNA:   3'- aCCCAa----GCGCGa-CUGCCA--UCgC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 13277 0.68 0.688455
Target:  5'- aGGGUUCGCGCcaGCGa-GGCGgGUCg -3'
miRNA:   3'- aCCCAAGCGCGacUGCcaUCGCgCGG- -5'
24643 5' -58.8 NC_005264.1 + 15375 0.68 0.717721
Target:  5'- cGGGagCGaCGC-GAUGGUGGaGUGCCu -3'
miRNA:   3'- aCCCaaGC-GCGaCUGCCAUCgCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 21232 0.67 0.783187
Target:  5'- cGGcuuucCGCGUUGACGacggcucgaGUGuGCGCGCCg -3'
miRNA:   3'- aCCcaa--GCGCGACUGC---------CAU-CGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 22035 0.69 0.6786
Target:  5'- aGcGUUCGgcuucagaccgaCGCcuugGACGGUAGCGcCGCCg -3'
miRNA:   3'- aCcCAAGC------------GCGa---CUGCCAUCGC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 27938 0.69 0.668709
Target:  5'- uUGGcGUUCuGCGCgu-CGGUGGuCGUGUCg -3'
miRNA:   3'- -ACC-CAAG-CGCGacuGCCAUC-GCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 30386 0.67 0.78229
Target:  5'- ----gUCGCGuCUcggcggcGGCGGUcGCGCGCCg -3'
miRNA:   3'- acccaAGCGC-GA-------CUGCCAuCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 30838 0.79 0.205358
Target:  5'- cGGGcUCGCGUcgucgucGGCGGcGGCGCGCCg -3'
miRNA:   3'- aCCCaAGCGCGa------CUGCCaUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 34242 0.67 0.746364
Target:  5'- cGGGUuucgucccgccUCGUGCgcGCGGUAauccGCGUGCUg -3'
miRNA:   3'- aCCCA-----------AGCGCGacUGCCAU----CGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.