miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24643 5' -58.8 NC_005264.1 + 88205 1.12 0.001172
Target:  5'- cUGGGUUCGCGCUGACGGUAGCGCGCCa -3'
miRNA:   3'- -ACCCAAGCGCGACUGCCAUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 132304 0.68 0.688455
Target:  5'- aGGGUUCGCGCcaGCGa-GGCGgGUCg -3'
miRNA:   3'- aCCCAAGCGCGacUGCcaUCGCgCGG- -5'
24643 5' -58.8 NC_005264.1 + 84896 0.68 0.708024
Target:  5'- cGGGc-CGCGCagGACGGgagGGCGggaagaGCCa -3'
miRNA:   3'- aCCCaaGCGCGa-CUGCCa--UCGCg-----CGG- -5'
24643 5' -58.8 NC_005264.1 + 125845 0.65 0.8416
Target:  5'- aGGGUgUUGcCGgaGGCGGcGGCgacuaugGCGCCa -3'
miRNA:   3'- aCCCA-AGC-GCgaCUGCCaUCG-------CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 58477 0.72 0.456134
Target:  5'- cUGGGaaCGC-CUGACGGUcGGCcCGCCu -3'
miRNA:   3'- -ACCCaaGCGcGACUGCCA-UCGcGCGG- -5'
24643 5' -58.8 NC_005264.1 + 9915 0.72 0.483444
Target:  5'- cGGGgacUCGCGaCUG-CGGgcuuugcGGCGCGCUg -3'
miRNA:   3'- aCCCa--AGCGC-GACuGCCa------UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 142801 0.71 0.55969
Target:  5'- cUGGacgUGaCGCUGcACGGgugcgAGCGCGCCg -3'
miRNA:   3'- -ACCcaaGC-GCGAC-UGCCa----UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 92484 0.7 0.57933
Target:  5'- cGGGUacacUGCGgUGGCGGU-GCGCcugGCCa -3'
miRNA:   3'- aCCCAa---GCGCgACUGCCAuCGCG---CGG- -5'
24643 5' -58.8 NC_005264.1 + 162673 0.69 0.658789
Target:  5'- cGGG-UCGUaGgUGuACGGUcGGCGCGCUg -3'
miRNA:   3'- aCCCaAGCG-CgAC-UGCCA-UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 131873 0.69 0.6786
Target:  5'- cGGGUccuucCGCGCcaGACGGUucGGgGuCGCCg -3'
miRNA:   3'- aCCCAa----GCGCGa-CUGCCA--UCgC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 65615 0.69 0.668709
Target:  5'- cUGcGUUCGCgGCUcGugGGUAcccGCGCGCg -3'
miRNA:   3'- -ACcCAAGCG-CGA-CugCCAU---CGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 93487 0.69 0.658789
Target:  5'- cUGaGG--CGCuGCUGGCGGccGGCGCGUCg -3'
miRNA:   3'- -AC-CCaaGCG-CGACUGCCa-UCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 87445 0.79 0.205358
Target:  5'- cGGc--CGCGCaGACGGUGGCGCGCa -3'
miRNA:   3'- aCCcaaGCGCGaCUGCCAUCGCGCGg -5'
24643 5' -58.8 NC_005264.1 + 22035 0.69 0.6786
Target:  5'- aGcGUUCGgcuucagaccgaCGCcuugGACGGUAGCGcCGCCg -3'
miRNA:   3'- aCcCAAGC------------GCGa---CUGCCAUCGC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 149864 0.79 0.205358
Target:  5'- cGGGcUCGCGUcgucgucGGCGGcGGCGCGCCg -3'
miRNA:   3'- aCCCaAGCGCGa------CUGCCaUCGCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 155997 0.7 0.599112
Target:  5'- aGaGGUUgCGCGCUGGCGccaUAGuCGcCGCCg -3'
miRNA:   3'- aC-CCAA-GCGCGACUGCc--AUC-GC-GCGG- -5'
24643 5' -58.8 NC_005264.1 + 121855 0.69 0.6786
Target:  5'- cGGGUUgGCGgaGGgcCGGUcGCgcucGCGCCg -3'
miRNA:   3'- aCCCAAgCGCgaCU--GCCAuCG----CGCGG- -5'
24643 5' -58.8 NC_005264.1 + 3311 0.68 0.708024
Target:  5'- cGGGaUCGCGCgccgugcaaGCGGagcgagagUAGuCGCGCCa -3'
miRNA:   3'- aCCCaAGCGCGac-------UGCC--------AUC-GCGCGG- -5'
24643 5' -58.8 NC_005264.1 + 148492 0.74 0.395847
Target:  5'- aUGGGacgcgcuggUCGCGUUGGCGGcgAGCGcCGCg -3'
miRNA:   3'- -ACCCa--------AGCGCGACUGCCa-UCGC-GCGg -5'
24643 5' -58.8 NC_005264.1 + 128877 0.71 0.510569
Target:  5'- aGGGUcaagcggccccuaUCGgGC--GCGGUcccGGCGCGCCa -3'
miRNA:   3'- aCCCA-------------AGCgCGacUGCCA---UCGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.