Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24644 | 3' | -58.2 | NC_005264.1 | + | 97166 | 0.68 | 0.722824 |
Target: 5'- aCGCGagAGCCACGUGuGAacuaGGGGCa- -3' miRNA: 3'- -GCGCg-UCGGUGCAU-CUgua-CCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 153223 | 0.68 | 0.722824 |
Target: 5'- uCGCGUacAGCCACGUuacggagccuucGGcGCAUGGGGg-- -3' miRNA: 3'- -GCGCG--UCGGUGCA------------UC-UGUACCCCgau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 132484 | 0.68 | 0.722824 |
Target: 5'- aCG-GCAGCCACGUGGccGCA-GGGcaGCUGc -3' miRNA: 3'- -GCgCGUCGGUGCAUC--UGUaCCC--CGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 120106 | 0.68 | 0.712956 |
Target: 5'- cCG-GguGCCGCGcAGAaGUGGGGCg- -3' miRNA: 3'- -GCgCguCGGUGCaUCUgUACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 109597 | 0.68 | 0.707002 |
Target: 5'- aCGCGCccgcggggcacggaaAGCaaaugGCGUGGGCggGGGGCg- -3' miRNA: 3'- -GCGCG---------------UCGg----UGCAUCUGuaCCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 118119 | 0.68 | 0.70302 |
Target: 5'- uCGCuGUAuCCGCGUAGGCcgaGUGGGGUa- -3' miRNA: 3'- -GCG-CGUcGGUGCAUCUG---UACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 162615 | 0.68 | 0.70302 |
Target: 5'- gGCGcCAGgCACGgaaagcGAUcgGGGGCUAc -3' miRNA: 3'- gCGC-GUCgGUGCau----CUGuaCCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 139852 | 0.68 | 0.70302 |
Target: 5'- aCGCGCGucCCAUGUGG-CAcGGGGCg- -3' miRNA: 3'- -GCGCGUc-GGUGCAUCuGUaCCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 43588 | 0.68 | 0.70302 |
Target: 5'- gGCGcCAGgCACGgaaagcGAUcgGGGGCUAc -3' miRNA: 3'- gCGC-GUCgGUGCau----CUGuaCCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 26896 | 0.68 | 0.693026 |
Target: 5'- aCGCGagaAGUCACGUGGu--UGGGGUa- -3' miRNA: 3'- -GCGCg--UCGGUGCAUCuguACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 19107 | 0.68 | 0.693026 |
Target: 5'- -cCGCGGCgGCGcggAGACGagcacuacgaUGGGGCUAc -3' miRNA: 3'- gcGCGUCGgUGCa--UCUGU----------ACCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 87637 | 0.68 | 0.682981 |
Target: 5'- cCGaUGCAGCCGCGUggggcgcgGGACcUGGcGGCa- -3' miRNA: 3'- -GC-GCGUCGGUGCA--------UCUGuACC-CCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 140408 | 0.68 | 0.682981 |
Target: 5'- aGCGUuuaCACGUAGGCAacGGGGCg- -3' miRNA: 3'- gCGCGucgGUGCAUCUGUa-CCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 154200 | 0.68 | 0.672895 |
Target: 5'- uCGCGC-GaaACGUAGACGUGGcGGUg- -3' miRNA: 3'- -GCGCGuCggUGCAUCUGUACC-CCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 5287 | 0.68 | 0.672895 |
Target: 5'- gGCGgGGCgGCGgcuGACccGUGGGGCg- -3' miRNA: 3'- gCGCgUCGgUGCau-CUG--UACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 124314 | 0.68 | 0.672895 |
Target: 5'- gGCGgGGCgGCGgcuGACccGUGGGGCg- -3' miRNA: 3'- gCGCgUCGgUGCau-CUG--UACCCCGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 150864 | 0.69 | 0.662776 |
Target: 5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3' miRNA: 3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 31838 | 0.69 | 0.662776 |
Target: 5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3' miRNA: 3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 69609 | 0.69 | 0.642473 |
Target: 5'- gGCGCcGCCcgGCGUgagaacgacAGGCuauUGGGGCUGg -3' miRNA: 3'- gCGCGuCGG--UGCA---------UCUGu--ACCCCGAU- -5' |
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24644 | 3' | -58.2 | NC_005264.1 | + | 142789 | 0.69 | 0.632306 |
Target: 5'- aCGCGgGGCCGCGUGgcGACAUGccaGGCc- -3' miRNA: 3'- -GCGCgUCGGUGCAU--CUGUACc--CCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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