miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 5' -59.3 NC_005264.1 + 120064 0.68 0.59558
Target:  5'- cGCCGGCCGUAacUGgccaCCCGgGucGCUCGg -3'
miRNA:   3'- -CGGUCGGCGU--AC----GGGCgCuuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 155232 0.71 0.447579
Target:  5'- -gCAGaCCGCAUgcgcgcagaccagaGCCCGCGAGGUUUAGg -3'
miRNA:   3'- cgGUC-GGCGUA--------------CGGGCGCUUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 59944 0.66 0.715585
Target:  5'- aGCuCGGCgGUuaucaugGUGUCCGCGccGCUCAGc -3'
miRNA:   3'- -CG-GUCGgCG-------UACGGGCGCuuCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 158243 0.67 0.667561
Target:  5'- cGCC-GCCGCGgcgcuggcggggaggGCCUGCGuucccGGCUCGg -3'
miRNA:   3'- -CGGuCGGCGUa--------------CGGGCGCu----UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 122459 0.68 0.605697
Target:  5'- --gGGCCGC--GCCCGCGcuGCUCGc -3'
miRNA:   3'- cggUCGGCGuaCGGGCGCuuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 6301 0.71 0.44127
Target:  5'- cCCAGCUGCAcuUGCgCgGCGAGGCUUc- -3'
miRNA:   3'- cGGUCGGCGU--ACG-GgCGCUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 93178 0.67 0.66655
Target:  5'- gGCCccagcGCCGCGUGCCCGaccuaGaAAGCgUCGu -3'
miRNA:   3'- -CGGu----CGGCGUACGGGCg----C-UUCG-AGUu -5'
24644 5' -59.3 NC_005264.1 + 147247 0.71 0.432345
Target:  5'- uGCCggAGCCGCAgcugcGCCCGC-AAGCUUg- -3'
miRNA:   3'- -CGG--UCGGCGUa----CGGGCGcUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 65459 0.72 0.423526
Target:  5'- uGCaCGGCCuGCggGCCUGCGA-GCUCGc -3'
miRNA:   3'- -CG-GUCGG-CGuaCGGGCGCUuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 16855 0.69 0.565411
Target:  5'- cGCCAGCCGCcgcgcaguucguAUucgcGCCgGCGAAGgUCGc -3'
miRNA:   3'- -CGGUCGGCG------------UA----CGGgCGCUUCgAGUu -5'
24644 5' -59.3 NC_005264.1 + 46550 0.68 0.615835
Target:  5'- gGCCacAGCCGUAgccGCCCGCGccacGGCUUc- -3'
miRNA:   3'- -CGG--UCGGCGUa--CGGGCGCu---UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 123749 0.66 0.764816
Target:  5'- gGUCAgacGCCGC-UGCCCGCcGAGC-CGg -3'
miRNA:   3'- -CGGU---CGGCGuACGGGCGcUUCGaGUu -5'
24644 5' -59.3 NC_005264.1 + 114127 0.68 0.64629
Target:  5'- cGCCGGCCGCcucaucuCCCGCG-AGCgaccgCGAc -3'
miRNA:   3'- -CGGUCGGCGuac----GGGCGCuUCGa----GUU- -5'
24644 5' -59.3 NC_005264.1 + 22007 0.67 0.675636
Target:  5'- gGCgCGGCgCGUAgguuuuuUGCCCGCGAGcGUUCGg -3'
miRNA:   3'- -CG-GUCG-GCGU-------ACGGGCGCUU-CGAGUu -5'
24644 5' -59.3 NC_005264.1 + 29408 0.67 0.696715
Target:  5'- cGCCAGCUccgggaagaaCAUGUCCGCGuAGGCUUu- -3'
miRNA:   3'- -CGGUCGGc---------GUACGGGCGC-UUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 71817 0.66 0.726399
Target:  5'- -gCGGCCGaagccGCCCGCGggGUcgCGAa -3'
miRNA:   3'- cgGUCGGCgua--CGGGCGCuuCGa-GUU- -5'
24644 5' -59.3 NC_005264.1 + 47900 0.69 0.575429
Target:  5'- cGUCAagaauuuacGCaCGUGUGCCCGCGGAGCcuuaUCGAc -3'
miRNA:   3'- -CGGU---------CG-GCGUACGGGCGCUUCG----AGUU- -5'
24644 5' -59.3 NC_005264.1 + 95420 0.7 0.477975
Target:  5'- cGCCAGCCGCAguuUGCuCUGCGGuuGCcCGGa -3'
miRNA:   3'- -CGGUCGGCGU---ACG-GGCGCUu-CGaGUU- -5'
24644 5' -59.3 NC_005264.1 + 157146 0.7 0.506464
Target:  5'- cGCCAGgCGU-UGCCCGCGc-GCUCu- -3'
miRNA:   3'- -CGGUCgGCGuACGGGCGCuuCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 38119 0.7 0.506464
Target:  5'- cGCCAGgCGU-UGCCCGCGc-GCUCu- -3'
miRNA:   3'- -CGGUCgGCGuACGGGCGCuuCGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.