miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 5' -59.3 NC_005264.1 + 29408 0.67 0.696715
Target:  5'- cGCCAGCUccgggaagaaCAUGUCCGCGuAGGCUUu- -3'
miRNA:   3'- -CGGUCGGc---------GUACGGGCGC-UUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 81696 0.67 0.686702
Target:  5'- aUCAG-CGCGUGCCUGUGggGgUCu- -3'
miRNA:   3'- cGGUCgGCGUACGGGCGCuuCgAGuu -5'
24644 5' -59.3 NC_005264.1 + 142592 0.67 0.676644
Target:  5'- gGCCGcGCCGCAaccccUGCCCacccgucacgcGCGggGC-CAc -3'
miRNA:   3'- -CGGU-CGGCGU-----ACGGG-----------CGCuuCGaGUu -5'
24644 5' -59.3 NC_005264.1 + 36124 0.67 0.675636
Target:  5'- cGCCGGCCGaCGauuucuuUGCCCacguagcgcuguGCG-AGCUCGGg -3'
miRNA:   3'- -CGGUCGGC-GU-------ACGGG------------CGCuUCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 22007 0.67 0.675636
Target:  5'- gGCgCGGCgCGUAgguuuuuUGCCCGCGAGcGUUCGg -3'
miRNA:   3'- -CG-GUCG-GCGU-------ACGGGCGCUU-CGAGUu -5'
24644 5' -59.3 NC_005264.1 + 39216 0.67 0.667561
Target:  5'- cGCC-GCCGCGgcgcuggcggggaggGCCUGCGuucccGGCUCGg -3'
miRNA:   3'- -CGGuCGGCGUa--------------CGGGCGCu----UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 158243 0.67 0.667561
Target:  5'- cGCC-GCCGCGgcgcuggcggggaggGCCUGCGuucccGGCUCGg -3'
miRNA:   3'- -CGGuCGGCGUa--------------CGGGCGCu----UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 93178 0.67 0.66655
Target:  5'- gGCCccagcGCCGCGUGCCCGaccuaGaAAGCgUCGu -3'
miRNA:   3'- -CGGu----CGGCGUACGGGCg----C-UUCG-AGUu -5'
24644 5' -59.3 NC_005264.1 + 49812 0.67 0.66655
Target:  5'- cCCAGUCGCGg--CCGCGGaaaAGCUCAu -3'
miRNA:   3'- cGGUCGGCGUacgGGCGCU---UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 55455 0.67 0.663517
Target:  5'- -gCAGCCGCAaccgucccuucuguUacGCCCGCGAgaaauaauAGCUCGc -3'
miRNA:   3'- cgGUCGGCGU--------------A--CGGGCGCU--------UCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 102233 0.67 0.65643
Target:  5'- aGCCGGCUGCcgcgGCauaCGagaaGggGCUCGAg -3'
miRNA:   3'- -CGGUCGGCGua--CGg--GCg---CuuCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 71539 0.67 0.65643
Target:  5'- aGCUguaCCGCcUGCUgGCGGAGCUCGu -3'
miRNA:   3'- -CGGuc-GGCGuACGGgCGCUUCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 128857 0.68 0.64629
Target:  5'- gGCC-GCCGCAcGUUCGCGAgaGGgUCAAg -3'
miRNA:   3'- -CGGuCGGCGUaCGGGCGCU--UCgAGUU- -5'
24644 5' -59.3 NC_005264.1 + 114127 0.68 0.64629
Target:  5'- cGCCGGCCGCcucaucuCCCGCG-AGCgaccgCGAc -3'
miRNA:   3'- -CGGUCGGCGuac----GGGCGCuUCGa----GUU- -5'
24644 5' -59.3 NC_005264.1 + 9831 0.68 0.64629
Target:  5'- gGCC-GCCGCAcGUUCGCGAgaGGgUCAAg -3'
miRNA:   3'- -CGGuCGGCGUaCGGGCGCU--UCgAGUU- -5'
24644 5' -59.3 NC_005264.1 + 63640 0.68 0.636139
Target:  5'- -gCGGCCGCGgagGCCUGCGAGGa---- -3'
miRNA:   3'- cgGUCGGCGUa--CGGGCGCUUCgaguu -5'
24644 5' -59.3 NC_005264.1 + 138547 0.68 0.636139
Target:  5'- aGCCacagaGGCCGcCGUGUUCGCGAAcauGCUCu- -3'
miRNA:   3'- -CGG-----UCGGC-GUACGGGCGCUU---CGAGuu -5'
24644 5' -59.3 NC_005264.1 + 113261 0.68 0.625984
Target:  5'- cGCCGGCgGCGUGCgCCGaGAAGgUgAAg -3'
miRNA:   3'- -CGGUCGgCGUACG-GGCgCUUCgAgUU- -5'
24644 5' -59.3 NC_005264.1 + 46550 0.68 0.615835
Target:  5'- gGCCacAGCCGUAgccGCCCGCGccacGGCUUc- -3'
miRNA:   3'- -CGG--UCGGCGUa--CGGGCGCu---UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 122459 0.68 0.605697
Target:  5'- --gGGCCGC--GCCCGCGcuGCUCGc -3'
miRNA:   3'- cggUCGGCGuaCGGGCGCuuCGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.