miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 80622 0.66 0.800357
Target:  5'- uUCUuggGCC-CCGaGgacgaUGGAcGCGCGGCCa -3'
miRNA:   3'- -AGA---UGGcGGCaCag---ACCU-CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 30377 0.66 0.800357
Target:  5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3'
miRNA:   3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 149404 0.66 0.800357
Target:  5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3'
miRNA:   3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 24176 0.66 0.800357
Target:  5'- gCUGCgGCCGcgGUC-GGuaaagucuGGCGCGGUg -3'
miRNA:   3'- aGAUGgCGGCa-CAGaCC--------UCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 19951 0.66 0.800357
Target:  5'- ---gUCGCCGUGa-UGGAgaaagGCGCGGCg -3'
miRNA:   3'- agauGGCGGCACagACCU-----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 22737 0.66 0.800357
Target:  5'- gUCUGCUGCCcgGUG-CUGGgcgaAGCgauaGCGGCg -3'
miRNA:   3'- -AGAUGGCGG--CACaGACC----UCG----CGCCGg -5'
24645 5' -59.7 NC_005264.1 + 125463 0.66 0.799492
Target:  5'- cUCUGCCgcGCCcUGcucggaggcucgcUCUuuuucGAGCGCGGCCa -3'
miRNA:   3'- -AGAUGG--CGGcAC-------------AGAc----CUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 117496 0.66 0.791646
Target:  5'- cCUuUCGCCucGUCUcGGGCGCGGCg -3'
miRNA:   3'- aGAuGGCGGcaCAGAcCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 147987 0.66 0.791646
Target:  5'- cCUAUCGCuCGUGagcUCUGGAGUccucGUcGCCa -3'
miRNA:   3'- aGAUGGCG-GCAC---AGACCUCG----CGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 83391 0.66 0.791646
Target:  5'- gCUGCCGCuCGUcGUCUGc-GCGCcgcgGGUCg -3'
miRNA:   3'- aGAUGGCG-GCA-CAGACcuCGCG----CCGG- -5'
24645 5' -59.7 NC_005264.1 + 41828 0.66 0.782802
Target:  5'- --cAUCGCCG-----GGAGCGCGGCUc -3'
miRNA:   3'- agaUGGCGGCacagaCCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 133234 0.66 0.782802
Target:  5'- --cGCCGCCGcGcuacgcuucgaUCUGGAGCcGCaGGCa -3'
miRNA:   3'- agaUGGCGGCaC-----------AGACCUCG-CG-CCGg -5'
24645 5' -59.7 NC_005264.1 + 70773 0.66 0.78191
Target:  5'- ----aCGCgGUGaauccUCUcgagcaaGGAGCGCGGCCc -3'
miRNA:   3'- agaugGCGgCAC-----AGA-------CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 95328 0.66 0.777434
Target:  5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3'
miRNA:   3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 125491 0.66 0.773831
Target:  5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3'
miRNA:   3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 5156 0.66 0.773831
Target:  5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3'
miRNA:   3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 75110 0.66 0.773831
Target:  5'- --cGgCGCCGag-CUGGGGCGCagucaaauGGCCg -3'
miRNA:   3'- agaUgGCGGCacaGACCUCGCG--------CCGG- -5'
24645 5' -59.7 NC_005264.1 + 98425 0.66 0.773831
Target:  5'- --cAUCGCCGUGcCcGcGGCGuCGGCCu -3'
miRNA:   3'- agaUGGCGGCACaGaCcUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 104432 0.66 0.773831
Target:  5'- --aGCCGCCGaUGUCgaacGAGCaaUGGCCa -3'
miRNA:   3'- agaUGGCGGC-ACAGac--CUCGc-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 124183 0.66 0.773831
Target:  5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3'
miRNA:   3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.