Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24645 | 5' | -59.7 | NC_005264.1 | + | 80622 | 0.66 | 0.800357 |
Target: 5'- uUCUuggGCC-CCGaGgacgaUGGAcGCGCGGCCa -3' miRNA: 3'- -AGA---UGGcGGCaCag---ACCU-CGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 104432 | 0.66 | 0.773831 |
Target: 5'- --aGCCGCCGaUGUCgaacGAGCaaUGGCCa -3' miRNA: 3'- agaUGGCGGC-ACAGac--CUCGc-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 147987 | 0.66 | 0.791646 |
Target: 5'- cCUAUCGCuCGUGagcUCUGGAGUccucGUcGCCa -3' miRNA: 3'- aGAUGGCG-GCAC---AGACCUCG----CGcCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 10973 | 0.66 | 0.763828 |
Target: 5'- ---cCCGCgagacgccccccaCGUGUCgccgccGGAGCGgCGGCCc -3' miRNA: 3'- agauGGCG-------------GCACAGa-----CCUCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 124183 | 0.66 | 0.773831 |
Target: 5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3' miRNA: 3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 75110 | 0.66 | 0.773831 |
Target: 5'- --cGgCGCCGag-CUGGGGCGCagucaaauGGCCg -3' miRNA: 3'- agaUgGCGGCacaGACCUCGCG--------CCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 70773 | 0.66 | 0.78191 |
Target: 5'- ----aCGCgGUGaauccUCUcgagcaaGGAGCGCGGCCc -3' miRNA: 3'- agaugGCGgCAC-----AGA-------CCUCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 41828 | 0.66 | 0.782802 |
Target: 5'- --cAUCGCCG-----GGAGCGCGGCUc -3' miRNA: 3'- agaUGGCGGCacagaCCUCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 125491 | 0.66 | 0.773831 |
Target: 5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3' miRNA: 3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 117496 | 0.66 | 0.791646 |
Target: 5'- cCUuUCGCCucGUCUcGGGCGCGGCg -3' miRNA: 3'- aGAuGGCGGcaCAGAcCUCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 61082 | 0.66 | 0.764743 |
Target: 5'- --gGCCGCCaccacGUCcuuuggGGAGCGCGccGCCa -3' miRNA: 3'- agaUGGCGGca---CAGa-----CCUCGCGC--CGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 19951 | 0.66 | 0.800357 |
Target: 5'- ---gUCGCCGUGa-UGGAgaaagGCGCGGCg -3' miRNA: 3'- agauGGCGGCACagACCU-----CGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 30377 | 0.66 | 0.800357 |
Target: 5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3' miRNA: 3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 125463 | 0.66 | 0.799492 |
Target: 5'- cUCUGCCgcGCCcUGcucggaggcucgcUCUuuuucGAGCGCGGCCa -3' miRNA: 3'- -AGAUGG--CGGcAC-------------AGAc----CUCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 83391 | 0.66 | 0.791646 |
Target: 5'- gCUGCCGCuCGUcGUCUGc-GCGCcgcgGGUCg -3' miRNA: 3'- aGAUGGCG-GCA-CAGACcuCGCG----CCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 133234 | 0.66 | 0.782802 |
Target: 5'- --cGCCGCCGcGcuacgcuucgaUCUGGAGCcGCaGGCa -3' miRNA: 3'- agaUGGCGGCaC-----------AGACCUCG-CG-CCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 95328 | 0.66 | 0.777434 |
Target: 5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3' miRNA: 3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 5156 | 0.66 | 0.773831 |
Target: 5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3' miRNA: 3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 98425 | 0.66 | 0.773831 |
Target: 5'- --cAUCGCCGUGcCcGcGGCGuCGGCCu -3' miRNA: 3'- agaUGGCGGCACaGaCcUCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 6464 | 0.66 | 0.773831 |
Target: 5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3' miRNA: 3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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