Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24645 | 5' | -59.7 | NC_005264.1 | + | 126296 | 0.68 | 0.678997 |
Target: 5'- -aUGCCGCUu--UCgGGcGCGCGGCCg -3' miRNA: 3'- agAUGGCGGcacAGaCCuCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 39540 | 0.68 | 0.678997 |
Target: 5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3' miRNA: 3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 102753 | 0.68 | 0.678997 |
Target: 5'- --gGCCGCCGgcaguaggCUaGGGGCG-GGCCa -3' miRNA: 3'- agaUGGCGGCaca-----GA-CCUCGCgCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 54253 | 0.68 | 0.65934 |
Target: 5'- --cGCCaaCGUGUCgagugGGAGCGgGGCg -3' miRNA: 3'- agaUGGcgGCACAGa----CCUCGCgCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 60953 | 0.68 | 0.649477 |
Target: 5'- uUCU-CCGCCGUGUUcgugugguUGGuGGuCGCGGUg -3' miRNA: 3'- -AGAuGGCGGCACAG--------ACC-UC-GCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 44895 | 0.68 | 0.688776 |
Target: 5'- ---cCCGUCGUcGUCUGGGGCGggaggagagaucCGGCg -3' miRNA: 3'- agauGGCGGCA-CAGACCUCGC------------GCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 112590 | 0.67 | 0.735907 |
Target: 5'- --cGCCGCCGcggcagGUgcacaaaCUgGGAGCGgGGCCc -3' miRNA: 3'- agaUGGCGGCa-----CA-------GA-CCUCGCgCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 148229 | 0.67 | 0.727373 |
Target: 5'- -aUGCCGUCGUGUCUcGAuuacgcguucGCGgCGGCg -3' miRNA: 3'- agAUGGCGGCACAGAcCU----------CGC-GCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 55167 | 0.67 | 0.727373 |
Target: 5'- -aUGCgGCC---UCUGG-GCGCGGCUg -3' miRNA: 3'- agAUGgCGGcacAGACCuCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 87507 | 0.67 | 0.708195 |
Target: 5'- aCUACgCGCUGUuaccGgcaCUGGcGCGCGGCa -3' miRNA: 3'- aGAUG-GCGGCA----Ca--GACCuCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 148394 | 0.67 | 0.708195 |
Target: 5'- cUUGCCGCCaUGcCUauuggGGAGgGCaGGCCg -3' miRNA: 3'- aGAUGGCGGcACaGA-----CCUCgCG-CCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 50028 | 0.67 | 0.736851 |
Target: 5'- -aUGCUGCCGUGcCUcGAGguUGCGGCa -3' miRNA: 3'- agAUGGCGGCACaGAcCUC--GCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 136009 | 0.67 | 0.736851 |
Target: 5'- --gACUGUU-UGUCUGGgggcucaagagcGGCGCGGCCc -3' miRNA: 3'- agaUGGCGGcACAGACC------------UCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 103136 | 0.67 | 0.755544 |
Target: 5'- --aGCCGCCGgcgC-GGcGCGCGGCg -3' miRNA: 3'- agaUGGCGGCacaGaCCuCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 33921 | 0.67 | 0.736851 |
Target: 5'- uUCUGCCGCCagg-CUGGgaaggccguGGCGC-GCCg -3' miRNA: 3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 16316 | 0.67 | 0.708195 |
Target: 5'- --cGCCGCacucucgacgCGUaGcUCUGGAaccGCGCGGCCc -3' miRNA: 3'- agaUGGCG----------GCA-C-AGACCU---CGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 27876 | 0.67 | 0.717818 |
Target: 5'- --cGCCGCCuuuuugucGUGUCUGGccAGCGUcucGGCg -3' miRNA: 3'- agaUGGCGG--------CACAGACC--UCGCG---CCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 152947 | 0.67 | 0.717818 |
Target: 5'- uUCUGCCGCCagggCUGGgaaggccguGGCGC-GCCg -3' miRNA: 3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 95328 | 0.66 | 0.777434 |
Target: 5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3' miRNA: 3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 5156 | 0.66 | 0.773831 |
Target: 5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3' miRNA: 3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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