miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 88589 1.12 0.000971
Target:  5'- cUCUACCGCCGUGUCUGGAGCGCGGCCa -3'
miRNA:   3'- -AGAUGGCGGCACAGACCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 101593 0.76 0.2508
Target:  5'- --gGCgCGCCGUGagCUGGAGCGC-GCCa -3'
miRNA:   3'- agaUG-GCGGCACa-GACCUCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 38171 0.76 0.274941
Target:  5'- aCUACCGCCGcgcUGUggGGAcaccuagcgucGCGCGGCCc -3'
miRNA:   3'- aGAUGGCGGC---ACAgaCCU-----------CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 157198 0.76 0.274941
Target:  5'- aCUACCGCCGcgcUGUggGGAcaccuagcgucGCGCGGCCc -3'
miRNA:   3'- aGAUGGCGGC---ACAgaCCU-----------CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 26375 0.76 0.28126
Target:  5'- gCUGCgcggCGCCGUcUCU-GAGCGCGGCCu -3'
miRNA:   3'- aGAUG----GCGGCAcAGAcCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 137176 0.73 0.398053
Target:  5'- uUCUGCUGCCcccagacGUGcCgauugaggaaaacgcGGAGCGCGGCCc -3'
miRNA:   3'- -AGAUGGCGG-------CACaGa--------------CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 148636 0.73 0.406315
Target:  5'- gUUUuCCGCCGUGgccgaUGGGGCGaCGGCg -3'
miRNA:   3'- -AGAuGGCGGCACag---ACCUCGC-GCCGg -5'
24645 5' -59.7 NC_005264.1 + 158859 0.71 0.473349
Target:  5'- -gUGCCGCCcUGcUUGGcgguaaagccggccGGCGCGGCCa -3'
miRNA:   3'- agAUGGCGGcACaGACC--------------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 39833 0.71 0.473349
Target:  5'- -gUGCCGCCcUGcUUGGcgguaaagccggccGGCGCGGCCa -3'
miRNA:   3'- agAUGGCGGcACaGACC--------------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 70382 0.71 0.476075
Target:  5'- --aACgGCUcgGUGgagCUGGAGgGCGGCCu -3'
miRNA:   3'- agaUGgCGG--CACa--GACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 111397 0.71 0.513117
Target:  5'- --cAUCGCCaacaagGUCgUGGAGgGCGGCCu -3'
miRNA:   3'- agaUGGCGGca----CAG-ACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 17132 0.71 0.522565
Target:  5'- uUCUGCgGUaCGgcGUCgaGGGGCGCGGCUa -3'
miRNA:   3'- -AGAUGgCG-GCa-CAGa-CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 69668 0.7 0.532079
Target:  5'- gCU-CCGCCcaGUCUGGAGCG-GcGCCc -3'
miRNA:   3'- aGAuGGCGGcaCAGACCUCGCgC-CGG- -5'
24645 5' -59.7 NC_005264.1 + 36077 0.7 0.551288
Target:  5'- gCUGCCGUCGcUGUCccucucuucGGCGCGGCUg -3'
miRNA:   3'- aGAUGGCGGC-ACAGacc------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 57368 0.7 0.560972
Target:  5'- --gGgUGCCGUGUUaaccuucggUGGGGCGCaGCCg -3'
miRNA:   3'- agaUgGCGGCACAG---------ACCUCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 48695 0.7 0.580473
Target:  5'- gUCUGCuCGUCGcgGUCgcucgcgGGAGaugagGCGGCCg -3'
miRNA:   3'- -AGAUG-GCGGCa-CAGa------CCUCg----CGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 74296 0.69 0.590278
Target:  5'- aUUAgCGgCG-GUCUGGcGCGCGGCa -3'
miRNA:   3'- aGAUgGCgGCaCAGACCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 43381 0.69 0.600112
Target:  5'- -aUGCCGaCCGUgaGUCUGu-GgGCGGCCu -3'
miRNA:   3'- agAUGGC-GGCA--CAGACcuCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 123224 0.69 0.600112
Target:  5'- --cAgCGCCGUGUCUaGGAGCaaGCGcGCa -3'
miRNA:   3'- agaUgGCGGCACAGA-CCUCG--CGC-CGg -5'
24645 5' -59.7 NC_005264.1 + 3360 0.69 0.609968
Target:  5'- uUCgcuCCGCUccGUCUGGGG-GCGGCg -3'
miRNA:   3'- -AGau-GGCGGcaCAGACCUCgCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.