miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 122387 0.69 0.609968
Target:  5'- uUCgcuCCGCUccGUCUGGGG-GCGGCg -3'
miRNA:   3'- -AGau-GGCGGcaCAGACCUCgCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 55262 0.69 0.629719
Target:  5'- --gACCGCCacgaagagCUGGGGCGCgcuaGGCCg -3'
miRNA:   3'- agaUGGCGGcaca----GACCUCGCG----CCGG- -5'
24645 5' -59.7 NC_005264.1 + 79860 0.69 0.629719
Target:  5'- aCUAUCaCCGUaccuucGUCacgGGGGCGCGGCg -3'
miRNA:   3'- aGAUGGcGGCA------CAGa--CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 2868 0.69 0.6396
Target:  5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3'
miRNA:   3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 121894 0.69 0.6396
Target:  5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3'
miRNA:   3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 60953 0.68 0.649477
Target:  5'- uUCU-CCGCCGUGUUcgugugguUGGuGGuCGCGGUg -3'
miRNA:   3'- -AGAuGGCGGCACAG--------ACC-UC-GCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 44339 0.68 0.649477
Target:  5'- --aACCGCCGacuaUGGAG-GUGGCCa -3'
miRNA:   3'- agaUGGCGGCacagACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 54253 0.68 0.65934
Target:  5'- --cGCCaaCGUGUCgagugGGAGCGgGGCg -3'
miRNA:   3'- agaUGGcgGCACAGa----CCUCGCgCCGg -5'
24645 5' -59.7 NC_005264.1 + 31175 0.68 0.65934
Target:  5'- -gUGCCGCCaacgGUCUGGcGGCG-GGCa -3'
miRNA:   3'- agAUGGCGGca--CAGACC-UCGCgCCGg -5'
24645 5' -59.7 NC_005264.1 + 67009 0.68 0.65934
Target:  5'- -gUGCUGCC-UGgacGGAGCGgCGGCCu -3'
miRNA:   3'- agAUGGCGGcACagaCCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 102753 0.68 0.678997
Target:  5'- --gGCCGCCGgcaguaggCUaGGGGCG-GGCCa -3'
miRNA:   3'- agaUGGCGGCaca-----GA-CCUCGCgCCGG- -5'
24645 5' -59.7 NC_005264.1 + 39540 0.68 0.678997
Target:  5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3'
miRNA:   3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 158567 0.68 0.678997
Target:  5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3'
miRNA:   3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 144805 0.68 0.678997
Target:  5'- aCUACCGCCGaca-UGGuuaaccugacCGCGGCCg -3'
miRNA:   3'- aGAUGGCGGCacagACCuc--------GCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 126296 0.68 0.678997
Target:  5'- -aUGCCGCUu--UCgGGcGCGCGGCCg -3'
miRNA:   3'- agAUGGCGGcacAGaCCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 82196 0.68 0.678997
Target:  5'- --aGCgGCCGUGUCgUGGccGCGCGuCCa -3'
miRNA:   3'- agaUGgCGGCACAG-ACCu-CGCGCcGG- -5'
24645 5' -59.7 NC_005264.1 + 46618 0.68 0.688776
Target:  5'- --cACCGUCGUG---GGAccGCGUGGCCg -3'
miRNA:   3'- agaUGGCGGCACagaCCU--CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 2769 0.68 0.688776
Target:  5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3'
miRNA:   3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 82172 0.68 0.688776
Target:  5'- --aACUGCCGUGcggCcGGucGGCgGCGGCCa -3'
miRNA:   3'- agaUGGCGGCACa--GaCC--UCG-CGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 44895 0.68 0.688776
Target:  5'- ---cCCGUCGUcGUCUGGGGCGggaggagagaucCGGCg -3'
miRNA:   3'- agauGGCGGCA-CAGACCUCGC------------GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.