miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 6464 0.66 0.773831
Target:  5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3'
miRNA:   3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 61082 0.66 0.764743
Target:  5'- --gGCCGCCaccacGUCcuuuggGGAGCGCGccGCCa -3'
miRNA:   3'- agaUGGCGGca---CAGa-----CCUCGCGC--CGG- -5'
24645 5' -59.7 NC_005264.1 + 10973 0.66 0.763828
Target:  5'- ---cCCGCgagacgccccccaCGUGUCgccgccGGAGCGgCGGCCc -3'
miRNA:   3'- agauGGCG-------------GCACAGa-----CCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 103136 0.67 0.755544
Target:  5'- --aGCCGCCGgcgC-GGcGCGCGGCg -3'
miRNA:   3'- agaUGGCGGCacaGaCCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 136009 0.67 0.736851
Target:  5'- --gACUGUU-UGUCUGGgggcucaagagcGGCGCGGCCc -3'
miRNA:   3'- agaUGGCGGcACAGACC------------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 50028 0.67 0.736851
Target:  5'- -aUGCUGCCGUGcCUcGAGguUGCGGCa -3'
miRNA:   3'- agAUGGCGGCACaGAcCUC--GCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 33921 0.67 0.736851
Target:  5'- uUCUGCCGCCagg-CUGGgaaggccguGGCGC-GCCg -3'
miRNA:   3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 112590 0.67 0.735907
Target:  5'- --cGCCGCCGcggcagGUgcacaaaCUgGGAGCGgGGCCc -3'
miRNA:   3'- agaUGGCGGCa-----CA-------GA-CCUCGCgCCGG- -5'
24645 5' -59.7 NC_005264.1 + 148229 0.67 0.727373
Target:  5'- -aUGCCGUCGUGUCUcGAuuacgcguucGCGgCGGCg -3'
miRNA:   3'- agAUGGCGGCACAGAcCU----------CGC-GCCGg -5'
24645 5' -59.7 NC_005264.1 + 55167 0.67 0.727373
Target:  5'- -aUGCgGCC---UCUGG-GCGCGGCUg -3'
miRNA:   3'- agAUGgCGGcacAGACCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 27876 0.67 0.717818
Target:  5'- --cGCCGCCuuuuugucGUGUCUGGccAGCGUcucGGCg -3'
miRNA:   3'- agaUGGCGG--------CACAGACC--UCGCG---CCGg -5'
24645 5' -59.7 NC_005264.1 + 152947 0.67 0.717818
Target:  5'- uUCUGCCGCCagggCUGGgaaggccguGGCGC-GCCg -3'
miRNA:   3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 87507 0.67 0.708195
Target:  5'- aCUACgCGCUGUuaccGgcaCUGGcGCGCGGCa -3'
miRNA:   3'- aGAUG-GCGGCA----Ca--GACCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 16316 0.67 0.708195
Target:  5'- --cGCCGCacucucgacgCGUaGcUCUGGAaccGCGCGGCCc -3'
miRNA:   3'- agaUGGCG----------GCA-C-AGACCU---CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 148394 0.67 0.708195
Target:  5'- cUUGCCGCCaUGcCUauuggGGAGgGCaGGCCg -3'
miRNA:   3'- aGAUGGCGGcACaGA-----CCUCgCG-CCGG- -5'
24645 5' -59.7 NC_005264.1 + 25193 0.68 0.698512
Target:  5'- aUCUgaggGCCGCCcuGUGUCUGucGAGCGgGGa- -3'
miRNA:   3'- -AGA----UGGCGG--CACAGAC--CUCGCgCCgg -5'
24645 5' -59.7 NC_005264.1 + 122684 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 89827 0.68 0.698512
Target:  5'- --gACCGCCGUGgggCgccaGGAGCuuucuGCGGUg -3'
miRNA:   3'- agaUGGCGGCACa--Ga---CCUCG-----CGCCGg -5'
24645 5' -59.7 NC_005264.1 + 6974 0.68 0.698512
Target:  5'- aUCUucgUCGUCGUGUC-GGucuccuccucGGCGUGGCCc -3'
miRNA:   3'- -AGAu--GGCGGCACAGaCC----------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 3657 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.