miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 2769 0.68 0.688776
Target:  5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3'
miRNA:   3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 2868 0.69 0.6396
Target:  5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3'
miRNA:   3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 3360 0.69 0.609968
Target:  5'- uUCgcuCCGCUccGUCUGGGG-GCGGCg -3'
miRNA:   3'- -AGau-GGCGGcaCAGACCUCgCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 3657 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 5156 0.66 0.773831
Target:  5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3'
miRNA:   3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 6464 0.66 0.773831
Target:  5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3'
miRNA:   3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 6974 0.68 0.698512
Target:  5'- aUCUucgUCGUCGUGUC-GGucuccuccucGGCGUGGCCc -3'
miRNA:   3'- -AGAu--GGCGGCACAGaCC----------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 10973 0.66 0.763828
Target:  5'- ---cCCGCgagacgccccccaCGUGUCgccgccGGAGCGgCGGCCc -3'
miRNA:   3'- agauGGCG-------------GCACAGa-----CCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 16316 0.67 0.708195
Target:  5'- --cGCCGCacucucgacgCGUaGcUCUGGAaccGCGCGGCCc -3'
miRNA:   3'- agaUGGCG----------GCA-C-AGACCU---CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 17132 0.71 0.522565
Target:  5'- uUCUGCgGUaCGgcGUCgaGGGGCGCGGCUa -3'
miRNA:   3'- -AGAUGgCG-GCa-CAGa-CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 19951 0.66 0.800357
Target:  5'- ---gUCGCCGUGa-UGGAgaaagGCGCGGCg -3'
miRNA:   3'- agauGGCGGCACagACCU-----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 22737 0.66 0.800357
Target:  5'- gUCUGCUGCCcgGUG-CUGGgcgaAGCgauaGCGGCg -3'
miRNA:   3'- -AGAUGGCGG--CACaGACC----UCG----CGCCGg -5'
24645 5' -59.7 NC_005264.1 + 24176 0.66 0.800357
Target:  5'- gCUGCgGCCGcgGUC-GGuaaagucuGGCGCGGUg -3'
miRNA:   3'- aGAUGgCGGCa-CAGaCC--------UCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 25193 0.68 0.698512
Target:  5'- aUCUgaggGCCGCCcuGUGUCUGucGAGCGgGGa- -3'
miRNA:   3'- -AGA----UGGCGG--CACAGAC--CUCGCgCCgg -5'
24645 5' -59.7 NC_005264.1 + 26375 0.76 0.28126
Target:  5'- gCUGCgcggCGCCGUcUCU-GAGCGCGGCCu -3'
miRNA:   3'- aGAUG----GCGGCAcAGAcCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 27876 0.67 0.717818
Target:  5'- --cGCCGCCuuuuugucGUGUCUGGccAGCGUcucGGCg -3'
miRNA:   3'- agaUGGCGG--------CACAGACC--UCGCG---CCGg -5'
24645 5' -59.7 NC_005264.1 + 30377 0.66 0.800357
Target:  5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3'
miRNA:   3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 31175 0.68 0.65934
Target:  5'- -gUGCCGCCaacgGUCUGGcGGCG-GGCa -3'
miRNA:   3'- agAUGGCGGca--CAGACC-UCGCgCCGg -5'
24645 5' -59.7 NC_005264.1 + 33921 0.67 0.736851
Target:  5'- uUCUGCCGCCagg-CUGGgaaggccguGGCGC-GCCg -3'
miRNA:   3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 36077 0.7 0.551288
Target:  5'- gCUGCCGUCGcUGUCccucucuucGGCGCGGCUg -3'
miRNA:   3'- aGAUGGCGGC-ACAGacc------UCGCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.