miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 38171 0.76 0.274941
Target:  5'- aCUACCGCCGcgcUGUggGGAcaccuagcgucGCGCGGCCc -3'
miRNA:   3'- aGAUGGCGGC---ACAgaCCU-----------CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 39540 0.68 0.678997
Target:  5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3'
miRNA:   3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 39833 0.71 0.473349
Target:  5'- -gUGCCGCCcUGcUUGGcgguaaagccggccGGCGCGGCCa -3'
miRNA:   3'- agAUGGCGGcACaGACC--------------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 41828 0.66 0.782802
Target:  5'- --cAUCGCCG-----GGAGCGCGGCUc -3'
miRNA:   3'- agaUGGCGGCacagaCCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 43381 0.69 0.600112
Target:  5'- -aUGCCGaCCGUgaGUCUGu-GgGCGGCCu -3'
miRNA:   3'- agAUGGC-GGCA--CAGACcuCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 44339 0.68 0.649477
Target:  5'- --aACCGCCGacuaUGGAG-GUGGCCa -3'
miRNA:   3'- agaUGGCGGCacagACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 44895 0.68 0.688776
Target:  5'- ---cCCGUCGUcGUCUGGGGCGggaggagagaucCGGCg -3'
miRNA:   3'- agauGGCGGCA-CAGACCUCGC------------GCCGg -5'
24645 5' -59.7 NC_005264.1 + 46618 0.68 0.688776
Target:  5'- --cACCGUCGUG---GGAccGCGUGGCCg -3'
miRNA:   3'- agaUGGCGGCACagaCCU--CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 48695 0.7 0.580473
Target:  5'- gUCUGCuCGUCGcgGUCgcucgcgGGAGaugagGCGGCCg -3'
miRNA:   3'- -AGAUG-GCGGCa-CAGa------CCUCg----CGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 50028 0.67 0.736851
Target:  5'- -aUGCUGCCGUGcCUcGAGguUGCGGCa -3'
miRNA:   3'- agAUGGCGGCACaGAcCUC--GCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 54253 0.68 0.65934
Target:  5'- --cGCCaaCGUGUCgagugGGAGCGgGGCg -3'
miRNA:   3'- agaUGGcgGCACAGa----CCUCGCgCCGg -5'
24645 5' -59.7 NC_005264.1 + 55167 0.67 0.727373
Target:  5'- -aUGCgGCC---UCUGG-GCGCGGCUg -3'
miRNA:   3'- agAUGgCGGcacAGACCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 55262 0.69 0.629719
Target:  5'- --gACCGCCacgaagagCUGGGGCGCgcuaGGCCg -3'
miRNA:   3'- agaUGGCGGcaca----GACCUCGCG----CCGG- -5'
24645 5' -59.7 NC_005264.1 + 57368 0.7 0.560972
Target:  5'- --gGgUGCCGUGUUaaccuucggUGGGGCGCaGCCg -3'
miRNA:   3'- agaUgGCGGCACAG---------ACCUCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 60953 0.68 0.649477
Target:  5'- uUCU-CCGCCGUGUUcgugugguUGGuGGuCGCGGUg -3'
miRNA:   3'- -AGAuGGCGGCACAG--------ACC-UC-GCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 61082 0.66 0.764743
Target:  5'- --gGCCGCCaccacGUCcuuuggGGAGCGCGccGCCa -3'
miRNA:   3'- agaUGGCGGca---CAGa-----CCUCGCGC--CGG- -5'
24645 5' -59.7 NC_005264.1 + 67009 0.68 0.65934
Target:  5'- -gUGCUGCC-UGgacGGAGCGgCGGCCu -3'
miRNA:   3'- agAUGGCGGcACagaCCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 69668 0.7 0.532079
Target:  5'- gCU-CCGCCcaGUCUGGAGCG-GcGCCc -3'
miRNA:   3'- aGAuGGCGGcaCAGACCUCGCgC-CGG- -5'
24645 5' -59.7 NC_005264.1 + 70382 0.71 0.476075
Target:  5'- --aACgGCUcgGUGgagCUGGAGgGCGGCCu -3'
miRNA:   3'- agaUGgCGG--CACa--GACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 70773 0.66 0.78191
Target:  5'- ----aCGCgGUGaauccUCUcgagcaaGGAGCGCGGCCc -3'
miRNA:   3'- agaugGCGgCAC-----AGA-------CCUCGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.