Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24645 | 5' | -59.7 | NC_005264.1 | + | 74296 | 0.69 | 0.590278 |
Target: 5'- aUUAgCGgCG-GUCUGGcGCGCGGCa -3' miRNA: 3'- aGAUgGCgGCaCAGACCuCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 75110 | 0.66 | 0.773831 |
Target: 5'- --cGgCGCCGag-CUGGGGCGCagucaaauGGCCg -3' miRNA: 3'- agaUgGCGGCacaGACCUCGCG--------CCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 79860 | 0.69 | 0.629719 |
Target: 5'- aCUAUCaCCGUaccuucGUCacgGGGGCGCGGCg -3' miRNA: 3'- aGAUGGcGGCA------CAGa--CCUCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 80622 | 0.66 | 0.800357 |
Target: 5'- uUCUuggGCC-CCGaGgacgaUGGAcGCGCGGCCa -3' miRNA: 3'- -AGA---UGGcGGCaCag---ACCU-CGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 82172 | 0.68 | 0.688776 |
Target: 5'- --aACUGCCGUGcggCcGGucGGCgGCGGCCa -3' miRNA: 3'- agaUGGCGGCACa--GaCC--UCG-CGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 82196 | 0.68 | 0.678997 |
Target: 5'- --aGCgGCCGUGUCgUGGccGCGCGuCCa -3' miRNA: 3'- agaUGgCGGCACAG-ACCu-CGCGCcGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 83391 | 0.66 | 0.791646 |
Target: 5'- gCUGCCGCuCGUcGUCUGc-GCGCcgcgGGUCg -3' miRNA: 3'- aGAUGGCG-GCA-CAGACcuCGCG----CCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 87507 | 0.67 | 0.708195 |
Target: 5'- aCUACgCGCUGUuaccGgcaCUGGcGCGCGGCa -3' miRNA: 3'- aGAUG-GCGGCA----Ca--GACCuCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 88589 | 1.12 | 0.000971 |
Target: 5'- cUCUACCGCCGUGUCUGGAGCGCGGCCa -3' miRNA: 3'- -AGAUGGCGGCACAGACCUCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 89827 | 0.68 | 0.698512 |
Target: 5'- --gACCGCCGUGgggCgccaGGAGCuuucuGCGGUg -3' miRNA: 3'- agaUGGCGGCACa--Ga---CCUCG-----CGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 95328 | 0.66 | 0.777434 |
Target: 5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3' miRNA: 3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 98425 | 0.66 | 0.773831 |
Target: 5'- --cAUCGCCGUGcCcGcGGCGuCGGCCu -3' miRNA: 3'- agaUGGCGGCACaGaCcUCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 101593 | 0.76 | 0.2508 |
Target: 5'- --gGCgCGCCGUGagCUGGAGCGC-GCCa -3' miRNA: 3'- agaUG-GCGGCACa-GACCUCGCGcCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 102753 | 0.68 | 0.678997 |
Target: 5'- --gGCCGCCGgcaguaggCUaGGGGCG-GGCCa -3' miRNA: 3'- agaUGGCGGCaca-----GA-CCUCGCgCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 103136 | 0.67 | 0.755544 |
Target: 5'- --aGCCGCCGgcgC-GGcGCGCGGCg -3' miRNA: 3'- agaUGGCGGCacaGaCCuCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 104432 | 0.66 | 0.773831 |
Target: 5'- --aGCCGCCGaUGUCgaacGAGCaaUGGCCa -3' miRNA: 3'- agaUGGCGGC-ACAGac--CUCGc-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 111397 | 0.71 | 0.513117 |
Target: 5'- --cAUCGCCaacaagGUCgUGGAGgGCGGCCu -3' miRNA: 3'- agaUGGCGGca----CAG-ACCUCgCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 112590 | 0.67 | 0.735907 |
Target: 5'- --cGCCGCCGcggcagGUgcacaaaCUgGGAGCGgGGCCc -3' miRNA: 3'- agaUGGCGGCa-----CA-------GA-CCUCGCgCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 117496 | 0.66 | 0.791646 |
Target: 5'- cCUuUCGCCucGUCUcGGGCGCGGCg -3' miRNA: 3'- aGAuGGCGGcaCAGAcCUCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 121795 | 0.68 | 0.688776 |
Target: 5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3' miRNA: 3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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