miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 158859 0.71 0.473349
Target:  5'- -gUGCCGCCcUGcUUGGcgguaaagccggccGGCGCGGCCa -3'
miRNA:   3'- agAUGGCGGcACaGACC--------------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 158567 0.68 0.678997
Target:  5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3'
miRNA:   3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 157198 0.76 0.274941
Target:  5'- aCUACCGCCGcgcUGUggGGAcaccuagcgucGCGCGGCCc -3'
miRNA:   3'- aGAUGGCGGC---ACAgaCCU-----------CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 152947 0.67 0.717818
Target:  5'- uUCUGCCGCCagggCUGGgaaggccguGGCGC-GCCg -3'
miRNA:   3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 149404 0.66 0.800357
Target:  5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3'
miRNA:   3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 148636 0.73 0.406315
Target:  5'- gUUUuCCGCCGUGgccgaUGGGGCGaCGGCg -3'
miRNA:   3'- -AGAuGGCGGCACag---ACCUCGC-GCCGg -5'
24645 5' -59.7 NC_005264.1 + 148394 0.67 0.708195
Target:  5'- cUUGCCGCCaUGcCUauuggGGAGgGCaGGCCg -3'
miRNA:   3'- aGAUGGCGGcACaGA-----CCUCgCG-CCGG- -5'
24645 5' -59.7 NC_005264.1 + 148229 0.67 0.727373
Target:  5'- -aUGCCGUCGUGUCUcGAuuacgcguucGCGgCGGCg -3'
miRNA:   3'- agAUGGCGGCACAGAcCU----------CGC-GCCGg -5'
24645 5' -59.7 NC_005264.1 + 147987 0.66 0.791646
Target:  5'- cCUAUCGCuCGUGagcUCUGGAGUccucGUcGCCa -3'
miRNA:   3'- aGAUGGCG-GCAC---AGACCUCG----CGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 144805 0.68 0.678997
Target:  5'- aCUACCGCCGaca-UGGuuaaccugacCGCGGCCg -3'
miRNA:   3'- aGAUGGCGGCacagACCuc--------GCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 137176 0.73 0.398053
Target:  5'- uUCUGCUGCCcccagacGUGcCgauugaggaaaacgcGGAGCGCGGCCc -3'
miRNA:   3'- -AGAUGGCGG-------CACaGa--------------CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 136009 0.67 0.736851
Target:  5'- --gACUGUU-UGUCUGGgggcucaagagcGGCGCGGCCc -3'
miRNA:   3'- agaUGGCGGcACAGACC------------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 133234 0.66 0.782802
Target:  5'- --cGCCGCCGcGcuacgcuucgaUCUGGAGCcGCaGGCa -3'
miRNA:   3'- agaUGGCGGCaC-----------AGACCUCG-CG-CCGg -5'
24645 5' -59.7 NC_005264.1 + 126296 0.68 0.678997
Target:  5'- -aUGCCGCUu--UCgGGcGCGCGGCCg -3'
miRNA:   3'- agAUGGCGGcacAGaCCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 125491 0.66 0.773831
Target:  5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3'
miRNA:   3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 125463 0.66 0.799492
Target:  5'- cUCUGCCgcGCCcUGcucggaggcucgcUCUuuuucGAGCGCGGCCa -3'
miRNA:   3'- -AGAUGG--CGGcAC-------------AGAc----CUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 124183 0.66 0.773831
Target:  5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3'
miRNA:   3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 123224 0.69 0.600112
Target:  5'- --cAgCGCCGUGUCUaGGAGCaaGCGcGCa -3'
miRNA:   3'- agaUgGCGGCACAGA-CCUCG--CGC-CGg -5'
24645 5' -59.7 NC_005264.1 + 122684 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 122387 0.69 0.609968
Target:  5'- uUCgcuCCGCUccGUCUGGGG-GCGGCg -3'
miRNA:   3'- -AGau-GGCGGcaCAGACCUCgCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.