miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 121894 0.69 0.6396
Target:  5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3'
miRNA:   3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 121795 0.68 0.688776
Target:  5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3'
miRNA:   3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 117496 0.66 0.791646
Target:  5'- cCUuUCGCCucGUCUcGGGCGCGGCg -3'
miRNA:   3'- aGAuGGCGGcaCAGAcCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 112590 0.67 0.735907
Target:  5'- --cGCCGCCGcggcagGUgcacaaaCUgGGAGCGgGGCCc -3'
miRNA:   3'- agaUGGCGGCa-----CA-------GA-CCUCGCgCCGG- -5'
24645 5' -59.7 NC_005264.1 + 111397 0.71 0.513117
Target:  5'- --cAUCGCCaacaagGUCgUGGAGgGCGGCCu -3'
miRNA:   3'- agaUGGCGGca----CAG-ACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 104432 0.66 0.773831
Target:  5'- --aGCCGCCGaUGUCgaacGAGCaaUGGCCa -3'
miRNA:   3'- agaUGGCGGC-ACAGac--CUCGc-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 103136 0.67 0.755544
Target:  5'- --aGCCGCCGgcgC-GGcGCGCGGCg -3'
miRNA:   3'- agaUGGCGGCacaGaCCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 102753 0.68 0.678997
Target:  5'- --gGCCGCCGgcaguaggCUaGGGGCG-GGCCa -3'
miRNA:   3'- agaUGGCGGCaca-----GA-CCUCGCgCCGG- -5'
24645 5' -59.7 NC_005264.1 + 101593 0.76 0.2508
Target:  5'- --gGCgCGCCGUGagCUGGAGCGC-GCCa -3'
miRNA:   3'- agaUG-GCGGCACa-GACCUCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 98425 0.66 0.773831
Target:  5'- --cAUCGCCGUGcCcGcGGCGuCGGCCu -3'
miRNA:   3'- agaUGGCGGCACaGaCcUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 95328 0.66 0.777434
Target:  5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3'
miRNA:   3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 89827 0.68 0.698512
Target:  5'- --gACCGCCGUGgggCgccaGGAGCuuucuGCGGUg -3'
miRNA:   3'- agaUGGCGGCACa--Ga---CCUCG-----CGCCGg -5'
24645 5' -59.7 NC_005264.1 + 88589 1.12 0.000971
Target:  5'- cUCUACCGCCGUGUCUGGAGCGCGGCCa -3'
miRNA:   3'- -AGAUGGCGGCACAGACCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 87507 0.67 0.708195
Target:  5'- aCUACgCGCUGUuaccGgcaCUGGcGCGCGGCa -3'
miRNA:   3'- aGAUG-GCGGCA----Ca--GACCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 83391 0.66 0.791646
Target:  5'- gCUGCCGCuCGUcGUCUGc-GCGCcgcgGGUCg -3'
miRNA:   3'- aGAUGGCG-GCA-CAGACcuCGCG----CCGG- -5'
24645 5' -59.7 NC_005264.1 + 82196 0.68 0.678997
Target:  5'- --aGCgGCCGUGUCgUGGccGCGCGuCCa -3'
miRNA:   3'- agaUGgCGGCACAG-ACCu-CGCGCcGG- -5'
24645 5' -59.7 NC_005264.1 + 82172 0.68 0.688776
Target:  5'- --aACUGCCGUGcggCcGGucGGCgGCGGCCa -3'
miRNA:   3'- agaUGGCGGCACa--GaCC--UCG-CGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 80622 0.66 0.800357
Target:  5'- uUCUuggGCC-CCGaGgacgaUGGAcGCGCGGCCa -3'
miRNA:   3'- -AGA---UGGcGGCaCag---ACCU-CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 79860 0.69 0.629719
Target:  5'- aCUAUCaCCGUaccuucGUCacgGGGGCGCGGCg -3'
miRNA:   3'- aGAUGGcGGCA------CAGa--CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 75110 0.66 0.773831
Target:  5'- --cGgCGCCGag-CUGGGGCGCagucaaauGGCCg -3'
miRNA:   3'- agaUgGCGGCacaGACCUCGCG--------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.