miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 122684 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 25193 0.68 0.698512
Target:  5'- aUCUgaggGCCGCCcuGUGUCUGucGAGCGgGGa- -3'
miRNA:   3'- -AGA----UGGCGG--CACAGAC--CUCGCgCCgg -5'
24645 5' -59.7 NC_005264.1 + 82196 0.68 0.678997
Target:  5'- --aGCgGCCGUGUCgUGGccGCGCGuCCa -3'
miRNA:   3'- agaUGgCGGCACAG-ACCu-CGCGCcGG- -5'
24645 5' -59.7 NC_005264.1 + 36077 0.7 0.551288
Target:  5'- gCUGCCGUCGcUGUCccucucuucGGCGCGGCUg -3'
miRNA:   3'- aGAUGGCGGC-ACAGacc------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 75110 0.66 0.773831
Target:  5'- --cGgCGCCGag-CUGGGGCGCagucaaauGGCCg -3'
miRNA:   3'- agaUgGCGGCacaGACCUCGCG--------CCGG- -5'
24645 5' -59.7 NC_005264.1 + 55167 0.67 0.727373
Target:  5'- -aUGCgGCC---UCUGG-GCGCGGCUg -3'
miRNA:   3'- agAUGgCGGcacAGACCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 121795 0.68 0.688776
Target:  5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3'
miRNA:   3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 69668 0.7 0.532079
Target:  5'- gCU-CCGCCcaGUCUGGAGCG-GcGCCc -3'
miRNA:   3'- aGAuGGCGGcaCAGACCUCGCgC-CGG- -5'
24645 5' -59.7 NC_005264.1 + 27876 0.67 0.717818
Target:  5'- --cGCCGCCuuuuugucGUGUCUGGccAGCGUcucGGCg -3'
miRNA:   3'- agaUGGCGG--------CACAGACC--UCGCG---CCGg -5'
24645 5' -59.7 NC_005264.1 + 17132 0.71 0.522565
Target:  5'- uUCUGCgGUaCGgcGUCgaGGGGCGCGGCUa -3'
miRNA:   3'- -AGAUGgCG-GCa-CAGa-CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 89827 0.68 0.698512
Target:  5'- --gACCGCCGUGgggCgccaGGAGCuuucuGCGGUg -3'
miRNA:   3'- agaUGGCGGCACa--Ga---CCUCG-----CGCCGg -5'
24645 5' -59.7 NC_005264.1 + 87507 0.67 0.708195
Target:  5'- aCUACgCGCUGUuaccGgcaCUGGcGCGCGGCa -3'
miRNA:   3'- aGAUG-GCGGCA----Ca--GACCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 158567 0.68 0.678997
Target:  5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3'
miRNA:   3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 144805 0.68 0.678997
Target:  5'- aCUACCGCCGaca-UGGuuaaccugacCGCGGCCg -3'
miRNA:   3'- aGAUGGCGGCacagACCuc--------GCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 121894 0.69 0.6396
Target:  5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3'
miRNA:   3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 43381 0.69 0.600112
Target:  5'- -aUGCCGaCCGUgaGUCUGu-GgGCGGCCu -3'
miRNA:   3'- agAUGGC-GGCA--CAGACcuCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 70773 0.66 0.78191
Target:  5'- ----aCGCgGUGaauccUCUcgagcaaGGAGCGCGGCCc -3'
miRNA:   3'- agaugGCGgCAC-----AGA-------CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 125491 0.66 0.773831
Target:  5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3'
miRNA:   3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 50028 0.67 0.736851
Target:  5'- -aUGCUGCCGUGcCUcGAGguUGCGGCa -3'
miRNA:   3'- agAUGGCGGCACaGAcCUC--GCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 148229 0.67 0.727373
Target:  5'- -aUGCCGUCGUGUCUcGAuuacgcguucGCGgCGGCg -3'
miRNA:   3'- agAUGGCGGCACAGAcCU----------CGC-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.