miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 55167 0.67 0.727373
Target:  5'- -aUGCgGCC---UCUGG-GCGCGGCUg -3'
miRNA:   3'- agAUGgCGGcacAGACCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 148229 0.67 0.727373
Target:  5'- -aUGCCGUCGUGUCUcGAuuacgcguucGCGgCGGCg -3'
miRNA:   3'- agAUGGCGGCACAGAcCU----------CGC-GCCGg -5'
24645 5' -59.7 NC_005264.1 + 41828 0.66 0.782802
Target:  5'- --cAUCGCCG-----GGAGCGCGGCUc -3'
miRNA:   3'- agaUGGCGGCacagaCCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 137176 0.73 0.398053
Target:  5'- uUCUGCUGCCcccagacGUGcCgauugaggaaaacgcGGAGCGCGGCCc -3'
miRNA:   3'- -AGAUGGCGG-------CACaGa--------------CCUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 149404 0.66 0.800357
Target:  5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3'
miRNA:   3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 22737 0.66 0.800357
Target:  5'- gUCUGCUGCCcgGUG-CUGGgcgaAGCgauaGCGGCg -3'
miRNA:   3'- -AGAUGGCGG--CACaGACC----UCG----CGCCGg -5'
24645 5' -59.7 NC_005264.1 + 95328 0.66 0.777434
Target:  5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3'
miRNA:   3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 57368 0.7 0.560972
Target:  5'- --gGgUGCCGUGUUaaccuucggUGGGGCGCaGCCg -3'
miRNA:   3'- agaUgGCGGCACAG---------ACCUCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 125463 0.66 0.799492
Target:  5'- cUCUGCCgcGCCcUGcucggaggcucgcUCUuuuucGAGCGCGGCCa -3'
miRNA:   3'- -AGAUGG--CGGcAC-------------AGAc----CUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 5156 0.66 0.773831
Target:  5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3'
miRNA:   3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 16316 0.67 0.708195
Target:  5'- --cGCCGCacucucgacgCGUaGcUCUGGAaccGCGCGGCCc -3'
miRNA:   3'- agaUGGCG----------GCA-C-AGACCU---CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 74296 0.69 0.590278
Target:  5'- aUUAgCGgCG-GUCUGGcGCGCGGCa -3'
miRNA:   3'- aGAUgGCgGCaCAGACCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 123224 0.69 0.600112
Target:  5'- --cAgCGCCGUGUCUaGGAGCaaGCGcGCa -3'
miRNA:   3'- agaUgGCGGCACAGA-CCUCG--CGC-CGg -5'
24645 5' -59.7 NC_005264.1 + 3360 0.69 0.609968
Target:  5'- uUCgcuCCGCUccGUCUGGGG-GCGGCg -3'
miRNA:   3'- -AGau-GGCGGcaCAGACCUCgCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 79860 0.69 0.629719
Target:  5'- aCUAUCaCCGUaccuucGUCacgGGGGCGCGGCg -3'
miRNA:   3'- aGAUGGcGGCA------CAGa--CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 2868 0.69 0.6396
Target:  5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3'
miRNA:   3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 44339 0.68 0.649477
Target:  5'- --aACCGCCGacuaUGGAG-GUGGCCa -3'
miRNA:   3'- agaUGGCGGCacagACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 44895 0.68 0.688776
Target:  5'- ---cCCGUCGUcGUCUGGGGCGggaggagagaucCGGCg -3'
miRNA:   3'- agauGGCGGCA-CAGACCUCGC------------GCCGg -5'
24645 5' -59.7 NC_005264.1 + 3657 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 6974 0.68 0.698512
Target:  5'- aUCUucgUCGUCGUGUC-GGucuccuccucGGCGUGGCCc -3'
miRNA:   3'- -AGAu--GGCGGCACAGaCC----------UCGCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.