Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24645 | 5' | -59.7 | NC_005264.1 | + | 30377 | 0.66 | 0.800357 |
Target: 5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3' miRNA: 3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 80622 | 0.66 | 0.800357 |
Target: 5'- uUCUuggGCC-CCGaGgacgaUGGAcGCGCGGCCa -3' miRNA: 3'- -AGA---UGGcGGCaCag---ACCU-CGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 2769 | 0.68 | 0.688776 |
Target: 5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3' miRNA: 3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 82172 | 0.68 | 0.688776 |
Target: 5'- --aACUGCCGUGcggCcGGucGGCgGCGGCCa -3' miRNA: 3'- agaUGGCGGCACa--GaCC--UCG-CGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 38171 | 0.76 | 0.274941 |
Target: 5'- aCUACCGCCGcgcUGUggGGAcaccuagcgucGCGCGGCCc -3' miRNA: 3'- aGAUGGCGGC---ACAgaCCU-----------CGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 26375 | 0.76 | 0.28126 |
Target: 5'- gCUGCgcggCGCCGUcUCU-GAGCGCGGCCu -3' miRNA: 3'- aGAUG----GCGGCAcAGAcCUCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 39833 | 0.71 | 0.473349 |
Target: 5'- -gUGCCGCCcUGcUUGGcgguaaagccggccGGCGCGGCCa -3' miRNA: 3'- agAUGGCGGcACaGACC--------------UCGCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 48695 | 0.7 | 0.580473 |
Target: 5'- gUCUGCuCGUCGcgGUCgcucgcgGGAGaugagGCGGCCg -3' miRNA: 3'- -AGAUG-GCGGCa-CAGa------CCUCg----CGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 57368 | 0.7 | 0.560972 |
Target: 5'- --gGgUGCCGUGUUaaccuucggUGGGGCGCaGCCg -3' miRNA: 3'- agaUgGCGGCACAG---------ACCUCGCGcCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 74296 | 0.69 | 0.590278 |
Target: 5'- aUUAgCGgCG-GUCUGGcGCGCGGCa -3' miRNA: 3'- aGAUgGCgGCaCAGACCuCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 123224 | 0.69 | 0.600112 |
Target: 5'- --cAgCGCCGUGUCUaGGAGCaaGCGcGCa -3' miRNA: 3'- agaUgGCGGCACAGA-CCUCG--CGC-CGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 3360 | 0.69 | 0.609968 |
Target: 5'- uUCgcuCCGCUccGUCUGGGG-GCGGCg -3' miRNA: 3'- -AGau-GGCGGcaCAGACCUCgCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 79860 | 0.69 | 0.629719 |
Target: 5'- aCUAUCaCCGUaccuucGUCacgGGGGCGCGGCg -3' miRNA: 3'- aGAUGGcGGCA------CAGa--CCUCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 2868 | 0.69 | 0.6396 |
Target: 5'- gCUGCgGCUGcGaUCgaccGGGGCGCGGCg -3' miRNA: 3'- aGAUGgCGGCaC-AGa---CCUCGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 44339 | 0.68 | 0.649477 |
Target: 5'- --aACCGCCGacuaUGGAG-GUGGCCa -3' miRNA: 3'- agaUGGCGGCacagACCUCgCGCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 60953 | 0.68 | 0.649477 |
Target: 5'- uUCU-CCGCCGUGUUcgugugguUGGuGGuCGCGGUg -3' miRNA: 3'- -AGAuGGCGGCACAG--------ACC-UC-GCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 54253 | 0.68 | 0.65934 |
Target: 5'- --cGCCaaCGUGUCgagugGGAGCGgGGCg -3' miRNA: 3'- agaUGGcgGCACAGa----CCUCGCgCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 102753 | 0.68 | 0.678997 |
Target: 5'- --gGCCGCCGgcaguaggCUaGGGGCG-GGCCa -3' miRNA: 3'- agaUGGCGGCaca-----GA-CCUCGCgCCGG- -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 39540 | 0.68 | 0.678997 |
Target: 5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3' miRNA: 3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5' |
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24645 | 5' | -59.7 | NC_005264.1 | + | 126296 | 0.68 | 0.678997 |
Target: 5'- -aUGCCGCUu--UCgGGcGCGCGGCCg -3' miRNA: 3'- agAUGGCGGcacAGaCCuCGCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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