miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24645 5' -59.7 NC_005264.1 + 102753 0.68 0.678997
Target:  5'- --gGCCGCCGgcaguaggCUaGGGGCG-GGCCa -3'
miRNA:   3'- agaUGGCGGCaca-----GA-CCUCGCgCCGG- -5'
24645 5' -59.7 NC_005264.1 + 6974 0.68 0.698512
Target:  5'- aUCUucgUCGUCGUGUC-GGucuccuccucGGCGUGGCCc -3'
miRNA:   3'- -AGAu--GGCGGCACAGaCC----------UCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 3657 0.68 0.698512
Target:  5'- --gGCCGCCGUcUCgacGAuGgGCGGCCg -3'
miRNA:   3'- agaUGGCGGCAcAGac-CU-CgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 44895 0.68 0.688776
Target:  5'- ---cCCGUCGUcGUCUGGGGCGggaggagagaucCGGCg -3'
miRNA:   3'- agauGGCGGCA-CAGACCUCGC------------GCCGg -5'
24645 5' -59.7 NC_005264.1 + 46618 0.68 0.688776
Target:  5'- --cACCGUCGUG---GGAccGCGUGGCCg -3'
miRNA:   3'- agaUGGCGGCACagaCCU--CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 2769 0.68 0.688776
Target:  5'- --cGgCGCCGUaccGUCUGGGGaGUGGUCg -3'
miRNA:   3'- agaUgGCGGCA---CAGACCUCgCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 82172 0.68 0.688776
Target:  5'- --aACUGCCGUGcggCcGGucGGCgGCGGCCa -3'
miRNA:   3'- agaUGGCGGCACa--GaCC--UCG-CGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 126296 0.68 0.678997
Target:  5'- -aUGCCGCUu--UCgGGcGCGCGGCCg -3'
miRNA:   3'- agAUGGCGGcacAGaCCuCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 39540 0.68 0.678997
Target:  5'- cUCUGCCGCCGccccgcGGuucccGCGCGGCa -3'
miRNA:   3'- -AGAUGGCGGCacaga-CCu----CGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 16316 0.67 0.708195
Target:  5'- --cGCCGCacucucgacgCGUaGcUCUGGAaccGCGCGGCCc -3'
miRNA:   3'- agaUGGCG----------GCA-C-AGACCU---CGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 33921 0.67 0.736851
Target:  5'- uUCUGCCGCCagg-CUGGgaaggccguGGCGC-GCCg -3'
miRNA:   3'- -AGAUGGCGGcacaGACC---------UCGCGcCGG- -5'
24645 5' -59.7 NC_005264.1 + 103136 0.67 0.755544
Target:  5'- --aGCCGCCGgcgC-GGcGCGCGGCg -3'
miRNA:   3'- agaUGGCGGCacaGaCCuCGCGCCGg -5'
24645 5' -59.7 NC_005264.1 + 30377 0.66 0.800357
Target:  5'- --cGCCGCCGcgucgcGUCUcGGcGGCGgCGGUCg -3'
miRNA:   3'- agaUGGCGGCa-----CAGA-CC-UCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 125463 0.66 0.799492
Target:  5'- cUCUGCCgcGCCcUGcucggaggcucgcUCUuuuucGAGCGCGGCCa -3'
miRNA:   3'- -AGAUGG--CGGcAC-------------AGAc----CUCGCGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 83391 0.66 0.791646
Target:  5'- gCUGCCGCuCGUcGUCUGc-GCGCcgcgGGUCg -3'
miRNA:   3'- aGAUGGCG-GCA-CAGACcuCGCG----CCGG- -5'
24645 5' -59.7 NC_005264.1 + 133234 0.66 0.782802
Target:  5'- --cGCCGCCGcGcuacgcuucgaUCUGGAGCcGCaGGCa -3'
miRNA:   3'- agaUGGCGGCaC-----------AGACCUCG-CG-CCGg -5'
24645 5' -59.7 NC_005264.1 + 95328 0.66 0.777434
Target:  5'- aUUGCCGCCGccggGcgccgcgaaacggacUCggcGGGGCGgCGGCCc -3'
miRNA:   3'- aGAUGGCGGCa---C---------------AGa--CCUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 5156 0.66 0.773831
Target:  5'- --cGCCGUCGUcGUC-GGuGC-CGGCCu -3'
miRNA:   3'- agaUGGCGGCA-CAGaCCuCGcGCCGG- -5'
24645 5' -59.7 NC_005264.1 + 98425 0.66 0.773831
Target:  5'- --cAUCGCCGUGcCcGcGGCGuCGGCCu -3'
miRNA:   3'- agaUGGCGGCACaGaCcUCGC-GCCGG- -5'
24645 5' -59.7 NC_005264.1 + 6464 0.66 0.773831
Target:  5'- cUCgGCgGCgCGgcgaacGUCggGGuGCGCGGCCa -3'
miRNA:   3'- -AGaUGgCG-GCa-----CAGa-CCuCGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.